Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1196

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1195 and Dshi_1196 are separated by 472 nucleotidesDshi_1196 and Dshi_1197 overlap by 4 nucleotides Dshi_1195: Dshi_1195 - TRAP transporter for fumarate, succinate, L-malate, and 2-oxoglutarate, solute receptor component (from data), at 1,234,239 to 1,235,231 _1195 Dshi_1196: Dshi_1196 - two component, sigma54 specific, transcriptional regulator, Fis family (RefSeq), at 1,235,704 to 1,237,050 _1196 Dshi_1197: Dshi_1197 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 1,237,047 to 1,238,915 _1197 Position (kb) 1235 1236 1237 1238Strain fitness (log2 ratio) -2 -1 0 1at 1234.769 kb on - strand, within Dshi_1195at 1235.004 kb on + strand, within Dshi_1195at 1235.288 kb on - strandat 1235.493 kb on + strandat 1235.501 kb on - strandat 1235.812 kb on + strandat 1235.820 kb on - strandat 1235.835 kb on - strandat 1235.905 kb on - strand, within Dshi_1196at 1235.925 kb on + strand, within Dshi_1196at 1236.013 kb on - strand, within Dshi_1196at 1236.094 kb on + strand, within Dshi_1196at 1236.280 kb on + strand, within Dshi_1196at 1236.358 kb on - strand, within Dshi_1196at 1236.459 kb on + strand, within Dshi_1196at 1236.634 kb on - strand, within Dshi_1196at 1236.654 kb on + strand, within Dshi_1196at 1236.857 kb on + strand, within Dshi_1196at 1237.039 kb on - strandat 1237.192 kb on - strandat 1237.233 kb on + strandat 1237.340 kb on - strand, within Dshi_1197at 1237.424 kb on - strand, within Dshi_1197at 1237.506 kb on - strand, within Dshi_1197at 1237.533 kb on - strand, within Dshi_1197at 1237.834 kb on + strand, within Dshi_1197at 1237.845 kb on + strand, within Dshi_1197at 1238.049 kb on + strand, within Dshi_1197

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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1,234,769 - Dshi_1195 0.53 -0.4
1,235,004 + Dshi_1195 0.77 -1.3
1,235,288 - +0.1
1,235,493 + -1.2
1,235,501 - +0.1
1,235,812 + -0.4
1,235,820 - -0.1
1,235,835 - -0.5
1,235,905 - Dshi_1196 0.15 -0.7
1,235,925 + Dshi_1196 0.16 -1.0
1,236,013 - Dshi_1196 0.23 -0.7
1,236,094 + Dshi_1196 0.29 -1.5
1,236,280 + Dshi_1196 0.43 -0.6
1,236,358 - Dshi_1196 0.49 -0.4
1,236,459 + Dshi_1196 0.56 -0.9
1,236,634 - Dshi_1196 0.69 -0.9
1,236,654 + Dshi_1196 0.71 -1.0
1,236,857 + Dshi_1196 0.86 +0.5
1,237,039 - -0.7
1,237,192 - -0.3
1,237,233 + -2.0
1,237,340 - Dshi_1197 0.16 +1.1
1,237,424 - Dshi_1197 0.20 -1.2
1,237,506 - Dshi_1197 0.25 -0.0
1,237,533 - Dshi_1197 0.26 -0.7
1,237,834 + Dshi_1197 0.42 -0.6
1,237,845 + Dshi_1197 0.43 -0.2
1,238,049 + Dshi_1197 0.54 -0.3

Or see this region's nucleotide sequence