Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0836 and Dshi_0837 are separated by 11 nucleotides Dshi_0837 and Dshi_0838 are separated by 280 nucleotides
Dshi_0836: Dshi_0836 - acetyl-CoA acetyltransferase (RefSeq), at 846,270 to 847,481
_0836
Dshi_0837: Dshi_0837 - Glutathione S-transferase domain (RefSeq), at 847,493 to 848,128
_0837
Dshi_0838: Dshi_0838 - acyl-CoA dehydrogenase domain protein (RefSeq), at 848,409 to 849,557
_0838
Position (kb)
847
848
849 Strain fitness (log2 ratio)
-1
0
1 at 846.506 kb on + strand, within Dshi_0836 at 846.569 kb on + strand, within Dshi_0836 at 846.627 kb on - strand, within Dshi_0836 at 846.820 kb on - strand, within Dshi_0836 at 846.890 kb on - strand, within Dshi_0836 at 846.938 kb on - strand, within Dshi_0836 at 846.967 kb on + strand, within Dshi_0836 at 847.035 kb on - strand, within Dshi_0836 at 847.076 kb on - strand, within Dshi_0836 at 847.229 kb on + strand, within Dshi_0836 at 847.367 kb on - strand at 847.440 kb on - strand at 847.472 kb on - strand at 847.511 kb on + strand at 847.511 kb on + strand at 847.520 kb on + strand at 847.533 kb on - strand at 847.554 kb on + strand at 847.555 kb on + strand at 847.561 kb on - strand, within Dshi_0837 at 847.562 kb on - strand, within Dshi_0837 at 847.615 kb on + strand, within Dshi_0837 at 847.672 kb on + strand, within Dshi_0837 at 847.682 kb on + strand, within Dshi_0837 at 847.885 kb on - strand, within Dshi_0837 at 847.933 kb on + strand, within Dshi_0837 at 847.942 kb on - strand, within Dshi_0837 at 848.004 kb on - strand, within Dshi_0837 at 848.004 kb on - strand, within Dshi_0837 at 848.137 kb on - strand at 848.158 kb on - strand at 848.165 kb on + strand at 848.168 kb on - strand at 848.254 kb on + strand at 848.257 kb on - strand at 848.269 kb on - strand at 848.381 kb on - strand at 848.389 kb on - strand at 848.407 kb on + strand at 848.415 kb on - strand at 848.490 kb on - strand at 848.666 kb on - strand, within Dshi_0838 at 848.667 kb on + strand, within Dshi_0838 at 848.694 kb on + strand, within Dshi_0838 at 848.697 kb on - strand, within Dshi_0838 at 848.725 kb on - strand, within Dshi_0838 at 848.959 kb on - strand, within Dshi_0838 at 848.980 kb on + strand, within Dshi_0838 at 849.010 kb on + strand, within Dshi_0838 at 849.012 kb on + strand, within Dshi_0838
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 846,506 + Dshi_0836 0.19 -0.3 846,569 + Dshi_0836 0.25 +0.3 846,627 - Dshi_0836 0.29 +0.8 846,820 - Dshi_0836 0.45 +0.3 846,890 - Dshi_0836 0.51 +0.2 846,938 - Dshi_0836 0.55 -0.1 846,967 + Dshi_0836 0.58 +0.3 847,035 - Dshi_0836 0.63 -0.2 847,076 - Dshi_0836 0.67 +1.5 847,229 + Dshi_0836 0.79 -0.7 847,367 - +0.3 847,440 - +0.0 847,472 - +0.1 847,511 + -0.4 847,511 + -1.5 847,520 + -0.6 847,533 - -0.7 847,554 + +0.1 847,555 + -0.3 847,561 - Dshi_0837 0.11 -0.8 847,562 - Dshi_0837 0.11 -0.1 847,615 + Dshi_0837 0.19 -0.7 847,672 + Dshi_0837 0.28 +0.0 847,682 + Dshi_0837 0.30 -1.1 847,885 - Dshi_0837 0.62 +0.5 847,933 + Dshi_0837 0.69 -1.0 847,942 - Dshi_0837 0.71 +0.1 848,004 - Dshi_0837 0.80 -0.6 848,004 - Dshi_0837 0.80 +0.3 848,137 - -0.0 848,158 - -1.0 848,165 + -0.5 848,168 - -1.1 848,254 + -0.8 848,257 - -0.3 848,269 - -0.7 848,381 - +0.7 848,389 - -0.5 848,407 + +0.2 848,415 - -0.1 848,490 - +0.2 848,666 - Dshi_0838 0.22 -0.8 848,667 + Dshi_0838 0.22 -0.1 848,694 + Dshi_0838 0.25 -0.4 848,697 - Dshi_0838 0.25 -1.1 848,725 - Dshi_0838 0.28 -0.0 848,959 - Dshi_0838 0.48 +0.0 848,980 + Dshi_0838 0.50 +0.2 849,010 + Dshi_0838 0.52 -0.5 849,012 + Dshi_0838 0.52 +0.2
Or see this region's nucleotide sequence