Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0830 and Dshi_0831 overlap by 4 nucleotides Dshi_0831 and Dshi_0832 are separated by 0 nucleotides Dshi_0832 and Dshi_0833 are separated by 464 nucleotides
Dshi_0830: Dshi_0830 - Adenosine deaminase (EC 3.5.4.4) <small>(from data)</small>, at 838,252 to 839,247
_0830
Dshi_0831: Dshi_0831 - uracil phosphoribosyltransferase (RefSeq), at 839,244 to 839,876
_0831
Dshi_0832: Dshi_0832 - hypothetical protein (RefSeq), at 839,877 to 840,893
_0832
Dshi_0833: Dshi_0833 - AMP-dependent synthetase and ligase (RefSeq), at 841,358 to 842,983
_0833
Position (kb) 839
840
841 Strain fitness (log2 ratio) -1
0
1 at 839.002 kb on - strand, within Dshi_0830 at 839.154 kb on + strand at 839.247 kb on + strand at 839.368 kb on - strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.408 kb on + strand, within Dshi_0831 at 839.632 kb on + strand, within Dshi_0831 at 839.646 kb on - strand, within Dshi_0831 at 839.774 kb on - strand, within Dshi_0831 at 839.819 kb on + strand at 839.935 kb on - strand at 839.969 kb on + strand at 840.002 kb on + strand, within Dshi_0832 at 840.213 kb on + strand, within Dshi_0832 at 840.353 kb on + strand, within Dshi_0832 at 840.434 kb on + strand, within Dshi_0832 at 840.594 kb on - strand, within Dshi_0832 at 840.688 kb on - strand, within Dshi_0832 at 840.854 kb on - strand at 840.878 kb on - strand at 840.893 kb on + strand at 840.895 kb on + strand at 841.015 kb on + strand at 841.043 kb on - strand at 841.043 kb on - strand at 841.153 kb on + strand at 841.161 kb on - strand at 841.319 kb on + strand at 841.342 kb on + strand at 841.413 kb on + strand at 841.498 kb on + strand at 841.578 kb on + strand, within Dshi_0833 at 841.583 kb on + strand, within Dshi_0833 at 841.591 kb on - strand, within Dshi_0833 at 841.609 kb on - strand, within Dshi_0833 at 841.757 kb on + strand, within Dshi_0833
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 839,002 - Dshi_0830 0.75 -1.4 839,154 + +0.3 839,247 + -0.1 839,368 - Dshi_0831 0.20 -0.2 839,408 + Dshi_0831 0.26 -0.3 839,408 + Dshi_0831 0.26 +1.3 839,632 + Dshi_0831 0.61 +0.9 839,646 - Dshi_0831 0.64 -1.2 839,774 - Dshi_0831 0.84 -0.1 839,819 + +0.0 839,935 - -1.4 839,969 + +0.7 840,002 + Dshi_0832 0.12 +0.4 840,213 + Dshi_0832 0.33 -0.2 840,353 + Dshi_0832 0.47 -1.1 840,434 + Dshi_0832 0.55 -1.1 840,594 - Dshi_0832 0.71 -1.1 840,688 - Dshi_0832 0.80 -0.3 840,854 - -0.2 840,878 - -0.2 840,893 + +0.3 840,895 + +0.5 841,015 + -0.4 841,043 - -0.4 841,043 - -0.8 841,153 + +0.2 841,161 - -0.4 841,319 + -0.5 841,342 + -1.1 841,413 + +1.1 841,498 + +0.6 841,578 + Dshi_0833 0.14 +0.9 841,583 + Dshi_0833 0.14 +0.4 841,591 - Dshi_0833 0.14 -0.8 841,609 - Dshi_0833 0.15 -0.1 841,757 + Dshi_0833 0.25 +0.1
Or see this region's nucleotide sequence