Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0791 and Dshi_0792 are separated by 58 nucleotides Dshi_0792 and Dshi_0793 are separated by 167 nucleotides Dshi_0793 and Dshi_0794 are separated by 145 nucleotides Dshi_0794 and Dshi_0795 are separated by 1 nucleotides
Dshi_0791: Dshi_0791 - protein of unknown function DUF541 (RefSeq), at 798,789 to 799,526
_0791
Dshi_0792: Dshi_0792 - hypothetical protein (RefSeq), at 799,585 to 799,959
_0792
Dshi_0793: Dshi_0793 - O-acetylhomoserine/O-acetylserine sulfhydrylase (RefSeq), at 800,127 to 801,422
_0793
Dshi_0794: Dshi_0794 - Imidazoleglycerol-phosphate dehydratase (RefSeq), at 801,568 to 802,155
_0794
Dshi_0795: Dshi_0795 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit (RefSeq), at 802,157 to 802,795
_0795
Position (kb) 800
801
802 Strain fitness (log2 ratio) -1
0
1 at 799.180 kb on + strand, within Dshi_0791 at 799.588 kb on + strand at 799.657 kb on - strand, within Dshi_0792 at 800.111 kb on + strand at 800.119 kb on - strand at 800.253 kb on - strand at 800.253 kb on - strand at 800.345 kb on + strand, within Dshi_0793 at 800.382 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.416 kb on + strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.424 kb on - strand, within Dshi_0793 at 800.458 kb on - strand, within Dshi_0793 at 800.564 kb on + strand, within Dshi_0793 at 800.567 kb on - strand, within Dshi_0793 at 800.586 kb on - strand, within Dshi_0793 at 800.648 kb on + strand, within Dshi_0793 at 800.843 kb on + strand, within Dshi_0793 at 800.843 kb on + strand, within Dshi_0793 at 800.851 kb on - strand, within Dshi_0793 at 800.851 kb on - strand, within Dshi_0793 at 800.854 kb on + strand, within Dshi_0793 at 801.082 kb on - strand, within Dshi_0793 at 801.115 kb on + strand, within Dshi_0793 at 801.144 kb on - strand, within Dshi_0793 at 801.149 kb on - strand, within Dshi_0793 at 801.224 kb on + strand, within Dshi_0793 at 801.231 kb on - strand, within Dshi_0793 at 801.306 kb on + strand at 801.314 kb on - strand at 801.381 kb on - strand at 801.397 kb on + strand at 801.425 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 799,180 + Dshi_0791 0.53 -0.1 799,588 + -0.8 799,657 - Dshi_0792 0.19 +0.2 800,111 + +0.5 800,119 - +0.1 800,253 - -1.5 800,253 - +0.5 800,345 + Dshi_0793 0.17 -0.1 800,382 + Dshi_0793 0.20 +1.4 800,416 + Dshi_0793 0.22 -0.0 800,416 + Dshi_0793 0.22 -0.5 800,416 + Dshi_0793 0.22 -0.3 800,416 + Dshi_0793 0.22 +0.4 800,424 - Dshi_0793 0.23 +1.2 800,424 - Dshi_0793 0.23 -0.5 800,424 - Dshi_0793 0.23 +1.5 800,458 - Dshi_0793 0.26 -1.0 800,564 + Dshi_0793 0.34 +0.9 800,567 - Dshi_0793 0.34 -0.3 800,586 - Dshi_0793 0.35 +0.6 800,648 + Dshi_0793 0.40 +0.2 800,843 + Dshi_0793 0.55 +0.1 800,843 + Dshi_0793 0.55 +0.5 800,851 - Dshi_0793 0.56 +0.5 800,851 - Dshi_0793 0.56 +0.3 800,854 + Dshi_0793 0.56 -0.3 801,082 - Dshi_0793 0.74 -0.3 801,115 + Dshi_0793 0.76 +0.2 801,144 - Dshi_0793 0.78 +1.0 801,149 - Dshi_0793 0.79 +0.3 801,224 + Dshi_0793 0.85 +1.7 801,231 - Dshi_0793 0.85 -0.3 801,306 + +0.1 801,314 - -0.4 801,381 - +0.4 801,397 + +0.1 801,425 - -0.1
Or see this region's nucleotide sequence