Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0673

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0671 and Dshi_0672 are separated by 30 nucleotidesDshi_0672 and Dshi_0673 overlap by 20 nucleotidesDshi_0673 and Dshi_0674 are separated by 59 nucleotides Dshi_0671: Dshi_0671 - methyltransferase small (RefSeq), at 676,410 to 677,411 _0671 Dshi_0672: Dshi_0672 - short-chain dehydrogenase/reductase SDR (RefSeq), at 677,442 to 678,248 _0672 Dshi_0673: Dshi_0673 - hypothetical protein (RefSeq), at 678,229 to 678,606 _0673 Dshi_0674: Dshi_0674 - Coproporphyrinogen oxidase (RefSeq), at 678,666 to 679,559 _0674 Position (kb) 678 679Strain fitness (log2 ratio) -2 -1 0 1at 677.262 kb on - strand, within Dshi_0671at 677.272 kb on - strand, within Dshi_0671at 677.298 kb on + strand, within Dshi_0671at 677.313 kb on - strandat 677.333 kb on + strandat 677.341 kb on - strandat 677.425 kb on - strandat 678.391 kb on - strand, within Dshi_0673at 678.434 kb on - strand, within Dshi_0673at 678.442 kb on + strand, within Dshi_0673at 678.463 kb on + strand, within Dshi_0673

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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677,262 - Dshi_0671 0.85 -1.0
677,272 - Dshi_0671 0.86 -1.0
677,298 + Dshi_0671 0.89 -0.9
677,313 - -0.0
677,333 + -0.7
677,341 - -2.0
677,425 - -0.5
678,391 - Dshi_0673 0.43 +0.5
678,434 - Dshi_0673 0.54 -0.6
678,442 + Dshi_0673 0.56 +0.2
678,463 + Dshi_0673 0.62 -0.5

Or see this region's nucleotide sequence