Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0671 and Dshi_0672 are separated by 30 nucleotides Dshi_0672 and Dshi_0673 overlap by 20 nucleotides Dshi_0673 and Dshi_0674 are separated by 59 nucleotides
Dshi_0671: Dshi_0671 - methyltransferase small (RefSeq), at 676,410 to 677,411
_0671
Dshi_0672: Dshi_0672 - short-chain dehydrogenase/reductase SDR (RefSeq), at 677,442 to 678,248
_0672
Dshi_0673: Dshi_0673 - hypothetical protein (RefSeq), at 678,229 to 678,606
_0673
Dshi_0674: Dshi_0674 - Coproporphyrinogen oxidase (RefSeq), at 678,666 to 679,559
_0674
Position (kb) 677
678
679 Strain fitness (log2 ratio) -2
-1
0
1 at 676.457 kb on - strand at 676.468 kb on + strand at 676.484 kb on + strand at 676.645 kb on - strand, within Dshi_0671 at 676.832 kb on + strand, within Dshi_0671 at 676.869 kb on + strand, within Dshi_0671 at 677.020 kb on + strand, within Dshi_0671 at 677.176 kb on - strand, within Dshi_0671 at 677.262 kb on - strand, within Dshi_0671 at 677.272 kb on - strand, within Dshi_0671 at 677.298 kb on + strand, within Dshi_0671 at 677.313 kb on - strand at 677.333 kb on + strand at 677.341 kb on - strand at 677.425 kb on - strand at 678.391 kb on - strand, within Dshi_0673 at 678.434 kb on - strand, within Dshi_0673 at 678.442 kb on + strand, within Dshi_0673 at 678.463 kb on + strand, within Dshi_0673
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 676,457 - -0.5 676,468 + -0.4 676,484 + -0.0 676,645 - Dshi_0671 0.23 +0.9 676,832 + Dshi_0671 0.42 +0.1 676,869 + Dshi_0671 0.46 -1.1 677,020 + Dshi_0671 0.61 +1.2 677,176 - Dshi_0671 0.76 -0.2 677,262 - Dshi_0671 0.85 -1.0 677,272 - Dshi_0671 0.86 -1.0 677,298 + Dshi_0671 0.89 -0.9 677,313 - -0.0 677,333 + -0.7 677,341 - -2.0 677,425 - -0.5 678,391 - Dshi_0673 0.43 +0.5 678,434 - Dshi_0673 0.54 -0.6 678,442 + Dshi_0673 0.56 +0.2 678,463 + Dshi_0673 0.62 -0.5
Or see this region's nucleotide sequence