Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0502

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0500 and Dshi_0501 overlap by 4 nucleotidesDshi_0501 and Dshi_0502 are separated by 115 nucleotidesDshi_0502 and Dshi_0503 are separated by 58 nucleotidesDshi_0503 and Dshi_0504 are separated by 3 nucleotides Dshi_0500: Dshi_0500 - molybdopterin-guanine dinucleotide biosynthesis protein A (RefSeq), at 485,120 to 485,656 _0500 Dshi_0501: Dshi_0501 - hypothetical protein (RefSeq), at 485,653 to 486,264 _0501 Dshi_0502: Dshi_0502 - cytoplasmic chaperone TorD family protein (RefSeq), at 486,380 to 487,042 _0502 Dshi_0503: Dshi_0503 - twin-arginine translocation pathway signal (RefSeq), at 487,101 to 487,310 _0503 Dshi_0504: Dshi_0504 - molybdopterin oxidoreductase (RefSeq), at 487,314 to 490,274 _0504 Position (kb) 486 487 488Strain fitness (log2 ratio) -2 -1 0 1 2at 485.467 kb on + strand, within Dshi_0500at 485.485 kb on - strand, within Dshi_0500at 485.562 kb on + strand, within Dshi_0500at 485.579 kb on + strand, within Dshi_0500at 485.755 kb on - strand, within Dshi_0501at 485.770 kb on - strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.783 kb on + strand, within Dshi_0501at 485.813 kb on - strand, within Dshi_0501at 485.853 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.912 kb on + strand, within Dshi_0501at 485.939 kb on - strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.947 kb on + strand, within Dshi_0501at 485.958 kb on + strand, within Dshi_0501at 486.014 kb on + strand, within Dshi_0501at 486.018 kb on + strand, within Dshi_0501at 486.035 kb on - strand, within Dshi_0501at 486.059 kb on - strand, within Dshi_0501at 486.069 kb on + strand, within Dshi_0501at 486.081 kb on + strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.089 kb on - strand, within Dshi_0501at 486.099 kb on - strand, within Dshi_0501at 486.126 kb on + strand, within Dshi_0501at 486.134 kb on - strand, within Dshi_0501at 486.199 kb on + strand, within Dshi_0501at 486.214 kb on - strandat 486.267 kb on + strandat 486.371 kb on + strandat 486.393 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.398 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.403 kb on + strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.406 kb on - strandat 486.411 kb on - strandat 486.411 kb on - strandat 486.511 kb on - strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.533 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.544 kb on + strand, within Dshi_0502at 486.552 kb on - strand, within Dshi_0502at 486.554 kb on + strand, within Dshi_0502at 486.559 kb on + strand, within Dshi_0502at 486.562 kb on - strand, within Dshi_0502at 486.624 kb on - strand, within Dshi_0502at 486.646 kb on + strand, within Dshi_0502at 486.691 kb on - strand, within Dshi_0502at 486.721 kb on + strand, within Dshi_0502at 486.734 kb on - strand, within Dshi_0502at 486.824 kb on + strand, within Dshi_0502at 486.832 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.837 kb on - strand, within Dshi_0502at 486.840 kb on + strand, within Dshi_0502at 486.848 kb on - strand, within Dshi_0502at 486.887 kb on + strand, within Dshi_0502at 486.902 kb on + strand, within Dshi_0502at 486.939 kb on + strand, within Dshi_0502at 486.947 kb on - strand, within Dshi_0502at 486.978 kb on - strandat 487.022 kb on - strandat 487.087 kb on + strandat 487.170 kb on + strand, within Dshi_0503at 487.178 kb on - strand, within Dshi_0503at 487.179 kb on + strand, within Dshi_0503at 487.220 kb on + strand, within Dshi_0503at 487.228 kb on - strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.272 kb on + strand, within Dshi_0503at 487.273 kb on - strand, within Dshi_0503at 487.319 kb on + strandat 487.395 kb on - strandat 487.417 kb on + strandat 487.425 kb on - strandat 487.425 kb on - strandat 487.435 kb on - strandat 487.459 kb on - strandat 487.489 kb on - strandat 487.540 kb on - strandat 487.561 kb on - strandat 487.561 kb on - strandat 487.605 kb on - strandat 487.615 kb on - strand, within Dshi_0504at 487.671 kb on + strand, within Dshi_0504at 487.944 kb on + strand, within Dshi_0504at 487.951 kb on - strand, within Dshi_0504at 487.953 kb on - strand, within Dshi_0504at 487.972 kb on - strand, within Dshi_0504

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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485,467 + Dshi_0500 0.65 -0.4
485,485 - Dshi_0500 0.68 +0.2
485,562 + Dshi_0500 0.82 +0.3
485,579 + Dshi_0500 0.85 -0.7
485,755 - Dshi_0501 0.17 -0.5
485,770 - Dshi_0501 0.19 -0.9
485,783 + Dshi_0501 0.21 -1.2
485,783 + Dshi_0501 0.21 +0.1
485,813 - Dshi_0501 0.26 -0.0
485,853 + Dshi_0501 0.33 +0.4
485,912 + Dshi_0501 0.42 +0.4
485,912 + Dshi_0501 0.42 -0.5
485,939 - Dshi_0501 0.47 +0.8
485,947 + Dshi_0501 0.48 -0.2
485,947 + Dshi_0501 0.48 -0.9
485,958 + Dshi_0501 0.50 -2.4
486,014 + Dshi_0501 0.59 +0.1
486,018 + Dshi_0501 0.60 -0.3
486,035 - Dshi_0501 0.62 +0.3
486,059 - Dshi_0501 0.66 +0.2
486,069 + Dshi_0501 0.68 +0.2
486,081 + Dshi_0501 0.70 +0.2
486,089 - Dshi_0501 0.71 +0.5
486,089 - Dshi_0501 0.71 -0.4
486,099 - Dshi_0501 0.73 -0.0
486,126 + Dshi_0501 0.77 +1.1
486,134 - Dshi_0501 0.79 -0.0
486,199 + Dshi_0501 0.89 +0.8
486,214 - +0.3
486,267 + -0.3
486,371 + +0.3
486,393 + -0.9
486,398 + -0.0
486,398 + +1.3
486,398 + -0.4
486,398 + +0.5
486,398 + -0.3
486,398 + -1.9
486,398 + -0.2
486,398 + -0.6
486,403 + +0.3
486,403 + +0.7
486,403 + +0.2
486,406 - +0.1
486,406 - +0.6
486,406 - +0.3
486,406 - +0.7
486,406 - +0.7
486,406 - +1.0
486,411 - -0.2
486,411 - +0.1
486,511 - Dshi_0502 0.20 +0.3
486,533 + Dshi_0502 0.23 +0.1
486,533 + Dshi_0502 0.23 -0.5
486,544 + Dshi_0502 0.25 +1.3
486,544 + Dshi_0502 0.25 +0.2
486,552 - Dshi_0502 0.26 -1.0
486,554 + Dshi_0502 0.26 -0.3
486,559 + Dshi_0502 0.27 -0.0
486,562 - Dshi_0502 0.27 -0.4
486,624 - Dshi_0502 0.37 +0.7
486,646 + Dshi_0502 0.40 -0.2
486,691 - Dshi_0502 0.47 +0.2
486,721 + Dshi_0502 0.51 +1.3
486,734 - Dshi_0502 0.53 -0.2
486,824 + Dshi_0502 0.67 -0.9
486,832 - Dshi_0502 0.68 -1.7
486,837 - Dshi_0502 0.69 -0.1
486,837 - Dshi_0502 0.69 -1.2
486,840 + Dshi_0502 0.69 -1.2
486,848 - Dshi_0502 0.71 -0.5
486,887 + Dshi_0502 0.76 +0.3
486,902 + Dshi_0502 0.79 -0.7
486,939 + Dshi_0502 0.84 -0.8
486,947 - Dshi_0502 0.86 -0.6
486,978 - +0.2
487,022 - -0.2
487,087 + -0.3
487,170 + Dshi_0503 0.33 -0.1
487,178 - Dshi_0503 0.37 +0.4
487,179 + Dshi_0503 0.37 -0.2
487,220 + Dshi_0503 0.57 -0.5
487,228 - Dshi_0503 0.60 +0.5
487,272 + Dshi_0503 0.81 -0.7
487,272 + Dshi_0503 0.81 +0.1
487,273 - Dshi_0503 0.82 +0.1
487,319 + -0.7
487,395 - -0.2
487,417 + +0.1
487,425 - +0.2
487,425 - +1.1
487,435 - -1.9
487,459 - +0.9
487,489 - -0.6
487,540 - -0.8
487,561 - -1.2
487,561 - +0.7
487,605 - -0.0
487,615 - Dshi_0504 0.10 +0.7
487,671 + Dshi_0504 0.12 +0.5
487,944 + Dshi_0504 0.21 -0.6
487,951 - Dshi_0504 0.22 +1.8
487,953 - Dshi_0504 0.22 -1.0
487,972 - Dshi_0504 0.22 -0.0

Or see this region's nucleotide sequence