Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0361 and Dshi_0362 overlap by 4 nucleotides Dshi_0362 and Dshi_0363 are separated by 39 nucleotides
Dshi_0361: Dshi_0361 - peptidase M16 domain protein (RefSeq), at 343,363 to 344,724
_0361
Dshi_0362: Dshi_0362 - peptidase M16 domain protein (RefSeq), at 344,721 to 346,034
_0362
Dshi_0363: Dshi_0363 - DNA mismatch repair protein MutL (RefSeq), at 346,074 to 347,939
_0363
Position (kb) 344
345
346
347 Strain fitness (log2 ratio) -2
-1
0
1 at 343.929 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.081 kb on + strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.089 kb on - strand, within Dshi_0361 at 344.099 kb on - strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.169 kb on + strand, within Dshi_0361 at 344.228 kb on - strand, within Dshi_0361 at 344.273 kb on - strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.320 kb on + strand, within Dshi_0361 at 344.328 kb on - strand, within Dshi_0361 at 344.366 kb on - strand, within Dshi_0361 at 344.519 kb on - strand, within Dshi_0361 at 344.526 kb on - strand, within Dshi_0361 at 344.565 kb on + strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.575 kb on - strand, within Dshi_0361 at 344.582 kb on + strand, within Dshi_0361 at 344.595 kb on + strand at 344.595 kb on + strand at 344.600 kb on + strand at 344.733 kb on - strand at 344.779 kb on - strand at 344.837 kb on + strand at 344.872 kb on + strand, within Dshi_0362 at 345.236 kb on + strand, within Dshi_0362 at 345.382 kb on - strand, within Dshi_0362 at 345.440 kb on + strand, within Dshi_0362 at 345.463 kb on + strand, within Dshi_0362 at 345.634 kb on + strand, within Dshi_0362 at 345.783 kb on - strand, within Dshi_0362 at 345.942 kb on - strand at 345.968 kb on + strand at 346.214 kb on - strand at 346.385 kb on - strand, within Dshi_0363 at 346.507 kb on - strand, within Dshi_0363 at 346.845 kb on - strand, within Dshi_0363 at 346.868 kb on - strand, within Dshi_0363 at 346.919 kb on + strand, within Dshi_0363 at 346.937 kb on + strand, within Dshi_0363 at 347.029 kb on + strand, within Dshi_0363
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 343,929 + Dshi_0361 0.42 -0.1 344,081 + Dshi_0361 0.53 -0.3 344,081 + Dshi_0361 0.53 -0.9 344,089 - Dshi_0361 0.53 -0.2 344,089 - Dshi_0361 0.53 -0.3 344,099 - Dshi_0361 0.54 -1.6 344,169 + Dshi_0361 0.59 -1.0 344,169 + Dshi_0361 0.59 -0.4 344,228 - Dshi_0361 0.64 -0.3 344,273 - Dshi_0361 0.67 -1.3 344,320 + Dshi_0361 0.70 -0.4 344,320 + Dshi_0361 0.70 -1.5 344,328 - Dshi_0361 0.71 -0.5 344,366 - Dshi_0361 0.74 -1.1 344,519 - Dshi_0361 0.85 +0.4 344,526 - Dshi_0361 0.85 +0.4 344,565 + Dshi_0361 0.88 -0.4 344,575 - Dshi_0361 0.89 +0.5 344,575 - Dshi_0361 0.89 -0.7 344,575 - Dshi_0361 0.89 -0.2 344,582 + Dshi_0361 0.90 -0.2 344,595 + -0.1 344,595 + -0.1 344,600 + -0.4 344,733 - +0.5 344,779 - -0.9 344,837 + -0.1 344,872 + Dshi_0362 0.11 -0.5 345,236 + Dshi_0362 0.39 -0.6 345,382 - Dshi_0362 0.50 -1.2 345,440 + Dshi_0362 0.55 -1.2 345,463 + Dshi_0362 0.56 -0.7 345,634 + Dshi_0362 0.69 +0.6 345,783 - Dshi_0362 0.81 +0.2 345,942 - -0.3 345,968 + +0.2 346,214 - -0.2 346,385 - Dshi_0363 0.17 -2.7 346,507 - Dshi_0363 0.23 -1.0 346,845 - Dshi_0363 0.41 -0.3 346,868 - Dshi_0363 0.43 -0.1 346,919 + Dshi_0363 0.45 +0.1 346,937 + Dshi_0363 0.46 -0.2 347,029 + Dshi_0363 0.51 -0.1
Or see this region's nucleotide sequence