Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0336 and Dshi_0337 are separated by 941 nucleotides Dshi_0337 and Dshi_0338 are separated by 381 nucleotides
Dshi_0336: Dshi_0336 - SNARE associated Golgi protein (RefSeq), at 323,755 to 324,486
_0336
Dshi_0337: Dshi_0337 - ATPase MipZ (RefSeq), at 325,428 to 326,237
_0337
Dshi_0338: Dshi_0338 - beta-lactamase domain protein (RefSeq), at 326,619 to 327,452
_0338
Position (kb)
325
326
327 Strain fitness (log2 ratio)
-2
-1
0
1 at 324.443 kb on + strand at 324.448 kb on + strand at 324.546 kb on + strand at 324.546 kb on + strand at 324.554 kb on - strand at 324.554 kb on - strand at 324.573 kb on - strand at 324.634 kb on + strand at 324.732 kb on + strand at 324.753 kb on + strand at 324.870 kb on + strand at 324.925 kb on - strand at 324.981 kb on - strand at 325.180 kb on + strand at 325.507 kb on - strand at 325.547 kb on - strand, within Dshi_0337 at 325.674 kb on - strand, within Dshi_0337 at 325.795 kb on - strand, within Dshi_0337 at 325.983 kb on - strand, within Dshi_0337 at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.288 kb on + strand at 326.296 kb on - strand at 326.296 kb on - strand at 326.339 kb on + strand at 326.340 kb on + strand at 326.342 kb on - strand at 326.342 kb on - strand at 326.358 kb on - strand at 326.432 kb on + strand at 326.467 kb on + strand at 326.499 kb on - strand at 326.514 kb on - strand at 326.740 kb on + strand, within Dshi_0338 at 326.910 kb on + strand, within Dshi_0338 at 326.995 kb on - strand, within Dshi_0338 at 327.073 kb on - strand, within Dshi_0338 at 327.118 kb on - strand, within Dshi_0338
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 324,443 + +1.0 324,448 + +0.5 324,546 + -0.2 324,546 + +0.3 324,554 - +0.1 324,554 - +0.5 324,573 - -0.2 324,634 + -0.2 324,732 + -0.2 324,753 + +0.3 324,870 + -0.8 324,925 - +1.5 324,981 - +0.3 325,180 + -0.3 325,507 - -2.6 325,547 - Dshi_0337 0.15 -0.9 325,674 - Dshi_0337 0.30 -0.7 325,795 - Dshi_0337 0.45 -1.8 325,983 - Dshi_0337 0.69 +0.3 326,288 + -0.7 326,288 + -1.2 326,288 + -1.6 326,288 + -0.8 326,288 + -1.7 326,296 - -1.2 326,296 - -0.8 326,339 + -0.0 326,340 + +0.1 326,342 - -0.8 326,342 - -0.5 326,358 - -0.3 326,432 + +0.3 326,467 + +0.1 326,499 - +0.1 326,514 - -0.1 326,740 + Dshi_0338 0.15 +0.3 326,910 + Dshi_0338 0.35 -1.6 326,995 - Dshi_0338 0.45 +0.3 327,073 - Dshi_0338 0.54 +1.2 327,118 - Dshi_0338 0.60 +0.9
Or see this region's nucleotide sequence