Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0323

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0321 and Dshi_0322 are separated by 43 nucleotidesDshi_0322 and Dshi_0323 overlap by 4 nucleotidesDshi_0323 and Dshi_0324 are separated by 52 nucleotides Dshi_0321: Dshi_0321 - ABC transporter related (RefSeq), at 309,980 to 310,756 _0321 Dshi_0322: Dshi_0322 - putative phosphohistidine phosphatase, SixA (RefSeq), at 310,800 to 311,300 _0322 Dshi_0323: Dshi_0323 - hypothetical protein (RefSeq), at 311,297 to 311,920 _0323 Dshi_0324: Dshi_0324 - acetylglutamate kinase (RefSeq), at 311,973 to 312,836 _0324 Position (kb) 311 312Strain fitness (log2 ratio) -1 0 1at 310.548 kb on - strand, within Dshi_0321at 311.516 kb on + strand, within Dshi_0323at 311.523 kb on + strand, within Dshi_0323at 311.977 kb on - strandat 312.893 kb on + strandat 312.893 kb on + strandat 312.901 kb on - strandat 312.901 kb on - strandat 312.901 kb on - strandat 312.901 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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310,548 - Dshi_0321 0.73 -0.5
311,516 + Dshi_0323 0.35 -0.7
311,523 + Dshi_0323 0.36 -0.9
311,977 - -0.2
312,893 + +1.2
312,893 + -1.1
312,901 - +1.3
312,901 - +0.6
312,901 - -1.2
312,901 - -1.1

Or see this region's nucleotide sequence