Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0315 and Dshi_0316 overlap by 4 nucleotides Dshi_0316 and Dshi_0317 overlap by 4 nucleotides Dshi_0317 and Dshi_0318 are separated by 349 nucleotides
Dshi_0315: Dshi_0315 - pseudouridine synthase, RluA family (RefSeq), at 303,518 to 304,564
_0315
Dshi_0316: Dshi_0316 - HAD-superfamily hydrolase, subfamily IA, variant 3 (RefSeq), at 304,561 to 305,241
_0316
Dshi_0317: Dshi_0317 - ATP12 ATPase (RefSeq), at 305,238 to 305,942
_0317
Dshi_0318: Dshi_0318 - cationic amino acid ABC transporter, periplasmic binding protein (RefSeq), at 306,292 to 307,308
_0318
Position (kb) 305
306 Strain fitness (log2 ratio) -2
-1
0
1 at 304.500 kb on + strand at 304.508 kb on - strand at 304.513 kb on + strand at 304.676 kb on - strand, within Dshi_0316 at 304.712 kb on - strand, within Dshi_0316 at 304.814 kb on + strand, within Dshi_0316 at 304.898 kb on - strand, within Dshi_0316 at 304.921 kb on + strand, within Dshi_0316 at 305.017 kb on - strand, within Dshi_0316 at 305.025 kb on + strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.033 kb on - strand, within Dshi_0316 at 305.111 kb on + strand, within Dshi_0316 at 305.149 kb on - strand, within Dshi_0316 at 305.150 kb on + strand, within Dshi_0316 at 305.176 kb on + strand at 305.936 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.948 kb on + strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 305.956 kb on - strand at 306.024 kb on - strand at 306.034 kb on - strand at 306.046 kb on - strand at 306.075 kb on + strand at 306.075 kb on + strand at 306.123 kb on + strand at 306.140 kb on - strand at 306.152 kb on - strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.200 kb on + strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.208 kb on - strand at 306.217 kb on - strand at 306.220 kb on - strand at 306.221 kb on + strand at 306.265 kb on - strand at 306.273 kb on + strand at 306.281 kb on - strand at 306.281 kb on - strand at 306.293 kb on - strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.332 kb on + strand at 306.363 kb on - strand at 306.373 kb on + strand at 306.381 kb on - strand at 306.381 kb on - strand at 306.388 kb on + strand at 306.388 kb on + strand at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.396 kb on - strand, within Dshi_0318 at 306.402 kb on + strand, within Dshi_0318 at 306.407 kb on + strand, within Dshi_0318 at 306.458 kb on + strand, within Dshi_0318 at 306.466 kb on - strand, within Dshi_0318 at 306.469 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.474 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.507 kb on + strand, within Dshi_0318 at 306.521 kb on + strand, within Dshi_0318 at 306.538 kb on + strand, within Dshi_0318 at 306.541 kb on - strand, within Dshi_0318 at 306.546 kb on - strand, within Dshi_0318 at 306.556 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.661 kb on + strand, within Dshi_0318 at 306.668 kb on + strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.669 kb on - strand, within Dshi_0318 at 306.727 kb on - strand, within Dshi_0318 at 306.914 kb on + strand, within Dshi_0318 at 306.930 kb on + strand, within Dshi_0318
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 304,500 + -0.5 304,508 - -0.7 304,513 + +0.2 304,676 - Dshi_0316 0.17 +0.3 304,712 - Dshi_0316 0.22 +0.1 304,814 + Dshi_0316 0.37 -1.1 304,898 - Dshi_0316 0.49 +0.5 304,921 + Dshi_0316 0.53 -0.2 305,017 - Dshi_0316 0.67 -0.9 305,025 + Dshi_0316 0.68 -0.7 305,033 - Dshi_0316 0.69 +0.3 305,033 - Dshi_0316 0.69 -0.7 305,111 + Dshi_0316 0.81 -0.2 305,149 - Dshi_0316 0.86 -0.5 305,150 + Dshi_0316 0.86 -0.3 305,176 + -1.7 305,936 + -0.9 305,948 + +0.6 305,948 + +0.1 305,948 + +0.2 305,948 + -0.7 305,948 + -0.8 305,948 + -0.8 305,948 + -0.7 305,948 + -0.3 305,948 + +0.1 305,948 + -1.2 305,948 + -1.5 305,948 + -0.2 305,948 + -0.2 305,948 + +0.9 305,948 + +1.3 305,948 + +0.1 305,948 + -1.2 305,948 + +0.0 305,948 + -1.1 305,948 + -0.0 305,948 + -0.5 305,948 + -1.1 305,948 + -0.4 305,948 + -0.3 305,948 + +0.0 305,948 + +0.2 305,956 - +0.1 305,956 - +0.3 305,956 - -1.0 305,956 - -1.2 305,956 - -0.0 305,956 - +0.3 305,956 - -0.7 305,956 - -0.7 305,956 - -0.9 305,956 - -0.4 305,956 - -0.3 305,956 - +0.3 305,956 - -0.4 305,956 - -0.8 305,956 - +1.5 305,956 - +0.6 305,956 - -0.1 305,956 - -0.5 305,956 - -1.2 305,956 - -0.3 306,024 - +0.2 306,034 - -1.1 306,046 - +0.1 306,075 + -0.7 306,075 + +1.3 306,123 + +0.8 306,140 - -0.9 306,152 - +0.0 306,200 + +0.5 306,200 + -0.6 306,200 + -1.1 306,200 + +0.3 306,200 + +0.3 306,208 - +0.3 306,208 - -0.6 306,208 - -0.7 306,208 - -0.3 306,208 - -2.2 306,217 - +0.3 306,220 - -0.7 306,221 + +0.9 306,265 - -0.2 306,273 + -0.3 306,281 - -1.1 306,281 - -0.0 306,293 - -0.6 306,332 + -0.7 306,332 + -0.9 306,332 + -0.7 306,363 - +0.3 306,373 + -0.1 306,381 - -1.0 306,381 - -1.0 306,388 + -0.1 306,388 + -0.8 306,396 - Dshi_0318 0.10 -0.6 306,396 - Dshi_0318 0.10 -0.2 306,396 - Dshi_0318 0.10 +0.1 306,402 + Dshi_0318 0.11 -0.4 306,407 + Dshi_0318 0.11 -0.9 306,458 + Dshi_0318 0.16 -1.2 306,466 - Dshi_0318 0.17 +0.1 306,469 + Dshi_0318 0.17 -0.3 306,474 + Dshi_0318 0.18 -0.4 306,474 + Dshi_0318 0.18 -0.9 306,507 + Dshi_0318 0.21 +0.2 306,507 + Dshi_0318 0.21 -0.7 306,521 + Dshi_0318 0.23 +0.6 306,538 + Dshi_0318 0.24 +0.3 306,541 - Dshi_0318 0.24 +0.8 306,546 - Dshi_0318 0.25 -0.5 306,556 + Dshi_0318 0.26 -0.5 306,661 + Dshi_0318 0.36 +0.3 306,661 + Dshi_0318 0.36 -1.4 306,668 + Dshi_0318 0.37 -0.5 306,669 - Dshi_0318 0.37 -0.1 306,669 - Dshi_0318 0.37 +0.3 306,727 - Dshi_0318 0.43 -0.4 306,914 + Dshi_0318 0.61 -1.2 306,930 + Dshi_0318 0.63 -0.0
Or see this region's nucleotide sequence