Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0195 and Dshi_0196 are separated by 25 nucleotides Dshi_0196 and Dshi_0197 overlap by 4 nucleotides Dshi_0197 and Dshi_0198 are separated by 139 nucleotides Dshi_0198 and Dshi_0199 are separated by 55 nucleotides
Dshi_0195: Dshi_0195 - hypothetical protein (RefSeq), at 195,599 to 196,255
_0195
Dshi_0196: Dshi_0196 - pyridoxal phosphate biosynthetic protein PdxJ (RefSeq), at 196,281 to 197,045
_0196
Dshi_0197: Dshi_0197 - hypothetical protein (RefSeq), at 197,042 to 197,704
_0197
Dshi_0198: Dshi_0198 - holo-acyl-carrier-protein synthase (RefSeq), at 197,844 to 198,263
_0198
Dshi_0199: Dshi_0199 - signal peptidase I (RefSeq), at 198,319 to 199,104
_0199
Position (kb) 197
198 Strain fitness (log2 ratio) -2
-1
0
1
2 at 196.072 kb on + strand, within Dshi_0195 at 196.080 kb on - strand, within Dshi_0195 at 196.080 kb on - strand, within Dshi_0195 at 196.080 kb on - strand, within Dshi_0195 at 196.142 kb on - strand, within Dshi_0195 at 196.171 kb on + strand, within Dshi_0195 at 196.295 kb on - strand at 197.024 kb on + strand at 197.039 kb on + strand at 197.057 kb on - strand at 197.092 kb on - strand at 197.578 kb on - strand, within Dshi_0197 at 197.578 kb on - strand, within Dshi_0197 at 197.588 kb on + strand, within Dshi_0197 at 197.595 kb on + strand, within Dshi_0197 at 197.694 kb on - strand at 197.716 kb on + strand at 197.821 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 196,072 + Dshi_0195 0.72 -1.3 196,080 - Dshi_0195 0.73 -2.0 196,080 - Dshi_0195 0.73 -1.1 196,080 - Dshi_0195 0.73 -1.6 196,142 - Dshi_0195 0.83 -0.9 196,171 + Dshi_0195 0.87 +0.4 196,295 - +0.1 197,024 + +0.8 197,039 + +0.5 197,057 - +0.5 197,092 - +0.6 197,578 - Dshi_0197 0.81 +0.6 197,578 - Dshi_0197 0.81 +0.4 197,588 + Dshi_0197 0.82 +0.1 197,595 + Dshi_0197 0.83 -0.2 197,694 - +2.0 197,716 + +0.9 197,821 - +0.1
Or see this region's nucleotide sequence