Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0163 and Dshi_0164 are separated by 219 nucleotides Dshi_0164 and Dshi_0165 are separated by 60 nucleotides Dshi_0165 and Dshi_0166 overlap by 4 nucleotides
Dshi_0163: Dshi_0163 - chromosome segregation protein SMC (RefSeq), at 164,463 to 167,915
_0163
Dshi_0164: Dshi_0164 - lytic murein transglycosylase (RefSeq), at 168,135 to 169,304
_0164
Dshi_0165: Dshi_0165 - cobalamin biosynthesis protein CobD (RefSeq), at 169,365 to 170,276
_0165
Dshi_0166: Dshi_0166 - aminotransferase class I and II (RefSeq), at 170,273 to 171,229
_0166
Position (kb) 168
169
170 Strain fitness (log2 ratio) -1
0
1 at 167.146 kb on + strand, within Dshi_0163 at 167.202 kb on + strand, within Dshi_0163 at 167.519 kb on - strand, within Dshi_0163 at 167.654 kb on - strand at 167.896 kb on - strand at 168.059 kb on - strand at 168.117 kb on - strand at 168.121 kb on - strand at 168.141 kb on - strand at 168.141 kb on - strand at 168.144 kb on + strand at 168.254 kb on + strand, within Dshi_0164 at 168.306 kb on + strand, within Dshi_0164 at 168.317 kb on + strand, within Dshi_0164 at 168.325 kb on - strand, within Dshi_0164 at 168.469 kb on - strand, within Dshi_0164 at 168.521 kb on + strand, within Dshi_0164 at 168.527 kb on + strand, within Dshi_0164 at 168.558 kb on + strand, within Dshi_0164 at 168.668 kb on - strand, within Dshi_0164 at 168.730 kb on + strand, within Dshi_0164 at 168.790 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164 at 169.032 kb on - strand, within Dshi_0164 at 169.058 kb on - strand, within Dshi_0164 at 169.124 kb on + strand, within Dshi_0164 at 169.132 kb on - strand, within Dshi_0164 at 169.190 kb on - strand at 169.203 kb on + strand at 169.313 kb on + strand at 169.313 kb on + strand at 169.321 kb on - strand at 169.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 167,146 + Dshi_0163 0.78 -0.9 167,202 + Dshi_0163 0.79 +0.4 167,519 - Dshi_0163 0.89 -0.5 167,654 - +0.4 167,896 - +1.4 168,059 - +0.2 168,117 - -0.2 168,121 - -0.9 168,141 - -0.2 168,141 - -0.2 168,144 + -0.5 168,254 + Dshi_0164 0.10 -0.3 168,306 + Dshi_0164 0.15 -1.1 168,317 + Dshi_0164 0.16 +0.3 168,325 - Dshi_0164 0.16 -0.4 168,469 - Dshi_0164 0.29 -0.5 168,521 + Dshi_0164 0.33 -0.3 168,527 + Dshi_0164 0.34 -0.3 168,558 + Dshi_0164 0.36 -1.0 168,668 - Dshi_0164 0.46 -1.1 168,730 + Dshi_0164 0.51 -0.7 168,790 + Dshi_0164 0.56 +0.1 168,883 + Dshi_0164 0.64 -0.9 168,883 + Dshi_0164 0.64 +0.4 169,032 - Dshi_0164 0.77 -0.7 169,058 - Dshi_0164 0.79 -0.5 169,124 + Dshi_0164 0.85 -0.5 169,132 - Dshi_0164 0.85 -1.3 169,190 - +0.4 169,203 + -0.5 169,313 + -0.3 169,313 + +0.3 169,321 - +1.0 169,321 - -0.0
Or see this region's nucleotide sequence