Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0161 and Dshi_0162 are separated by 15 nucleotides Dshi_0162 and Dshi_0163 are separated by 432 nucleotides Dshi_0163 and Dshi_0164 are separated by 219 nucleotides
Dshi_0161: Dshi_0161 - cobalt transporter, subunit CbtA (RefSeq), at 163,128 to 163,817
_0161
Dshi_0162: Dshi_0162 - hypothetical protein (RefSeq), at 163,833 to 164,030
_0162
Dshi_0163: Dshi_0163 - chromosome segregation protein SMC (RefSeq), at 164,463 to 167,915
_0163
Dshi_0164: Dshi_0164 - lytic murein transglycosylase (RefSeq), at 168,135 to 169,304
_0164
Position (kb) 164
165
166
167
168 Strain fitness (log2 ratio) -2
-1
0
1 at 163.491 kb on - strand, within Dshi_0161 at 164.204 kb on - strand at 164.233 kb on + strand at 164.244 kb on + strand at 164.244 kb on + strand at 164.282 kb on + strand at 164.299 kb on - strand at 164.299 kb on - strand at 164.419 kb on + strand at 164.434 kb on - strand at 164.483 kb on + strand at 164.580 kb on - strand at 164.742 kb on - strand at 164.762 kb on + strand at 165.001 kb on - strand, within Dshi_0163 at 165.041 kb on + strand, within Dshi_0163 at 165.095 kb on + strand, within Dshi_0163 at 165.289 kb on + strand, within Dshi_0163 at 165.485 kb on - strand, within Dshi_0163 at 165.764 kb on - strand, within Dshi_0163 at 166.136 kb on - strand, within Dshi_0163 at 166.234 kb on - strand, within Dshi_0163 at 166.531 kb on - strand, within Dshi_0163 at 166.583 kb on + strand, within Dshi_0163 at 167.027 kb on - strand, within Dshi_0163 at 167.029 kb on - strand, within Dshi_0163 at 167.037 kb on - strand, within Dshi_0163 at 167.108 kb on + strand, within Dshi_0163 at 167.146 kb on + strand, within Dshi_0163 at 167.202 kb on + strand, within Dshi_0163 at 167.519 kb on - strand, within Dshi_0163 at 167.654 kb on - strand at 167.896 kb on - strand at 168.059 kb on - strand at 168.117 kb on - strand at 168.121 kb on - strand at 168.141 kb on - strand at 168.141 kb on - strand at 168.144 kb on + strand at 168.254 kb on + strand, within Dshi_0164 at 168.306 kb on + strand, within Dshi_0164 at 168.317 kb on + strand, within Dshi_0164 at 168.325 kb on - strand, within Dshi_0164 at 168.469 kb on - strand, within Dshi_0164 at 168.521 kb on + strand, within Dshi_0164 at 168.527 kb on + strand, within Dshi_0164 at 168.558 kb on + strand, within Dshi_0164 at 168.668 kb on - strand, within Dshi_0164 at 168.730 kb on + strand, within Dshi_0164 at 168.790 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164 at 168.883 kb on + strand, within Dshi_0164
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 163,491 - Dshi_0161 0.53 +0.3 164,204 - +0.7 164,233 + +0.2 164,244 + -0.2 164,244 + +0.4 164,282 + +0.5 164,299 - -1.3 164,299 - -0.2 164,419 + -1.2 164,434 - +0.7 164,483 + +0.2 164,580 - +0.6 164,742 - -0.2 164,762 + -0.7 165,001 - Dshi_0163 0.16 +0.8 165,041 + Dshi_0163 0.17 +0.1 165,095 + Dshi_0163 0.18 -1.4 165,289 + Dshi_0163 0.24 -1.4 165,485 - Dshi_0163 0.30 -0.2 165,764 - Dshi_0163 0.38 -2.0 166,136 - Dshi_0163 0.48 -1.1 166,234 - Dshi_0163 0.51 -0.4 166,531 - Dshi_0163 0.60 -1.0 166,583 + Dshi_0163 0.61 -1.0 167,027 - Dshi_0163 0.74 -1.2 167,029 - Dshi_0163 0.74 -0.5 167,037 - Dshi_0163 0.75 -1.8 167,108 + Dshi_0163 0.77 -0.2 167,146 + Dshi_0163 0.78 -0.9 167,202 + Dshi_0163 0.79 +0.4 167,519 - Dshi_0163 0.89 -0.5 167,654 - +0.4 167,896 - +1.4 168,059 - +0.2 168,117 - -0.2 168,121 - -0.9 168,141 - -0.2 168,141 - -0.2 168,144 + -0.5 168,254 + Dshi_0164 0.10 -0.3 168,306 + Dshi_0164 0.15 -1.1 168,317 + Dshi_0164 0.16 +0.3 168,325 - Dshi_0164 0.16 -0.4 168,469 - Dshi_0164 0.29 -0.5 168,521 + Dshi_0164 0.33 -0.3 168,527 + Dshi_0164 0.34 -0.3 168,558 + Dshi_0164 0.36 -1.0 168,668 - Dshi_0164 0.46 -1.1 168,730 + Dshi_0164 0.51 -0.7 168,790 + Dshi_0164 0.56 +0.1 168,883 + Dshi_0164 0.64 -0.9 168,883 + Dshi_0164 0.64 +0.4
Or see this region's nucleotide sequence