Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0100 and Dshi_0101 are separated by 398 nucleotides Dshi_0101 and Dshi_0102 are separated by 301 nucleotides
Dshi_0100: Dshi_0100 - transposase, putative (RefSeq), at 96,999 to 98,882
_0100
Dshi_0101: Dshi_0101 - hypothetical protein (RefSeq), at 99,281 to 99,538
_0101
Dshi_0102: Dshi_0102 - DNA polymerase III, alpha subunit (RefSeq), at 99,840 to 102,824
_0102
Position (kb) 99
100 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 98.346 kb on + strand, within Dshi_0100 at 98.354 kb on - strand, within Dshi_0100 at 98.397 kb on + strand, within Dshi_0100 at 98.463 kb on + strand, within Dshi_0100 at 98.471 kb on - strand at 98.505 kb on - strand, within Dshi_0100 at 98.505 kb on - strand, within Dshi_0100 at 98.505 kb on - strand, within Dshi_0100 at 98.506 kb on - strand, within Dshi_0100 at 98.537 kb on + strand, within Dshi_0100 at 98.577 kb on + strand, within Dshi_0100 at 98.645 kb on - strand, within Dshi_0100 at 98.656 kb on - strand, within Dshi_0100 at 98.775 kb on + strand at 98.782 kb on - strand at 98.783 kb on - strand at 98.785 kb on + strand at 98.787 kb on + strand at 98.803 kb on - strand at 98.803 kb on - strand at 98.811 kb on + strand at 98.811 kb on + strand at 98.811 kb on + strand at 98.819 kb on + strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.819 kb on - strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.820 kb on + strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.828 kb on - strand at 98.910 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.912 kb on + strand at 98.918 kb on + strand at 98.918 kb on - strand at 98.918 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.920 kb on - strand at 98.923 kb on + strand at 98.923 kb on + strand at 98.931 kb on - strand at 98.931 kb on - strand at 98.933 kb on + strand at 98.941 kb on - strand at 98.941 kb on - strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.088 kb on + strand at 99.096 kb on - strand at 99.096 kb on - strand at 99.099 kb on - strand at 99.114 kb on + strand at 99.133 kb on + strand at 99.133 kb on + strand at 99.141 kb on + strand at 99.143 kb on + strand at 99.149 kb on + strand at 99.149 kb on - strand at 99.149 kb on - strand at 99.157 kb on + strand at 99.157 kb on - strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.172 kb on + strand at 99.175 kb on - strand at 99.180 kb on - strand at 99.180 kb on - strand at 99.180 kb on - strand at 99.182 kb on + strand at 99.182 kb on + strand at 99.184 kb on + strand at 99.192 kb on + strand at 99.201 kb on - strand at 99.220 kb on + strand at 99.225 kb on - strand at 99.234 kb on + strand at 99.235 kb on + strand at 99.235 kb on - strand at 99.244 kb on + strand at 99.251 kb on - strand at 99.251 kb on - strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.261 kb on + strand at 99.263 kb on + strand at 99.269 kb on - strand at 99.269 kb on - strand at 99.271 kb on - strand at 99.271 kb on - strand at 99.283 kb on + strand at 99.324 kb on - strand, within Dshi_0101 at 99.343 kb on + strand, within Dshi_0101 at 99.348 kb on + strand, within Dshi_0101 at 99.370 kb on - strand, within Dshi_0101 at 99.386 kb on + strand, within Dshi_0101 at 99.429 kb on + strand, within Dshi_0101 at 99.453 kb on + strand, within Dshi_0101 at 99.455 kb on + strand, within Dshi_0101 at 99.461 kb on - strand, within Dshi_0101 at 99.465 kb on + strand, within Dshi_0101 at 99.465 kb on + strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.473 kb on - strand, within Dshi_0101 at 99.489 kb on + strand, within Dshi_0101 at 99.489 kb on + strand, within Dshi_0101 at 99.525 kb on + strand at 99.576 kb on + strand at 99.586 kb on - strand at 99.627 kb on + strand at 99.693 kb on - strand at 99.693 kb on - strand at 99.694 kb on - strand at 99.734 kb on - strand at 99.744 kb on - strand at 99.757 kb on + strand at 99.766 kb on + strand at 99.782 kb on - strand at 99.897 kb on + strand at 99.921 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.924 kb on + strand at 99.932 kb on - strand at 99.933 kb on - strand at 99.953 kb on - strand at 99.968 kb on + strand at 99.983 kb on + strand at 99.986 kb on - strand at 100.001 kb on - strand at 100.064 kb on + strand at 100.064 kb on + strand at 100.064 kb on + strand at 100.072 kb on - strand at 100.072 kb on - strand at 100.073 kb on - strand at 100.077 kb on - strand at 100.188 kb on + strand, within Dshi_0102 at 100.188 kb on + strand, within Dshi_0102 at 100.188 kb on + strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.196 kb on - strand, within Dshi_0102 at 100.200 kb on - strand, within Dshi_0102 at 100.208 kb on + strand, within Dshi_0102 at 100.216 kb on - strand, within Dshi_0102 at 100.244 kb on - strand, within Dshi_0102 at 100.334 kb on + strand, within Dshi_0102 at 100.342 kb on - strand, within Dshi_0102 at 100.344 kb on + strand, within Dshi_0102 at 100.393 kb on + strand, within Dshi_0102 at 100.425 kb on + strand, within Dshi_0102 at 100.463 kb on + strand, within Dshi_0102 at 100.470 kb on + strand, within Dshi_0102 at 100.479 kb on - strand, within Dshi_0102
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 98,346 + Dshi_0100 0.71 +1.1 98,354 - Dshi_0100 0.72 +0.7 98,397 + Dshi_0100 0.74 -0.9 98,463 + Dshi_0100 0.78 -0.2 98,471 - +1.4 98,505 - Dshi_0100 0.80 -0.2 98,505 - Dshi_0100 0.80 -0.9 98,505 - Dshi_0100 0.80 +0.4 98,506 - Dshi_0100 0.80 +0.6 98,537 + Dshi_0100 0.82 -0.1 98,577 + Dshi_0100 0.84 +1.4 98,645 - Dshi_0100 0.87 +0.2 98,656 - Dshi_0100 0.88 -0.4 98,775 + +0.6 98,782 - +0.0 98,783 - -1.9 98,785 + +0.2 98,787 + +0.7 98,803 - -0.6 98,803 - -0.0 98,811 + +0.2 98,811 + -0.4 98,811 + +1.7 98,819 + -0.1 98,819 - +0.8 98,819 - -0.4 98,819 - +1.8 98,819 - +0.1 98,820 + -0.1 98,820 + -0.3 98,820 + +0.3 98,820 + -0.6 98,820 + +1.0 98,820 + -0.9 98,820 + -0.9 98,820 + -0.6 98,820 + +0.8 98,820 + -0.1 98,828 - +0.3 98,828 - -0.7 98,828 - -0.8 98,828 - +0.1 98,910 + +0.6 98,912 + +1.4 98,912 + +0.5 98,912 + -0.3 98,912 + +1.1 98,912 + -0.6 98,912 + -0.3 98,912 + -2.2 98,918 + +0.3 98,918 - +0.7 98,918 - -0.8 98,920 - +0.4 98,920 - +0.3 98,920 - +0.8 98,920 - -0.6 98,920 - +1.1 98,920 - +0.2 98,920 - +3.7 98,920 - +0.5 98,920 - -0.2 98,920 - -0.4 98,923 + -0.2 98,923 + -0.3 98,931 - +0.1 98,931 - +0.1 98,933 + +0.5 98,941 - +0.7 98,941 - -0.6 99,088 + -1.2 99,088 + +0.2 99,088 + -0.4 99,088 + -0.6 99,096 - -0.8 99,096 - -2.1 99,099 - -0.2 99,114 + -0.2 99,133 + -0.6 99,133 + -0.6 99,141 + -1.8 99,143 + -1.4 99,149 + -0.9 99,149 - -1.2 99,149 - -1.2 99,157 + -1.7 99,157 - -0.6 99,172 + +0.1 99,172 + -1.3 99,172 + -0.9 99,172 + -0.2 99,175 - +2.4 99,180 - -0.6 99,180 - -1.2 99,180 - -1.6 99,182 + -0.6 99,182 + +1.4 99,184 + +0.4 99,192 + -0.2 99,201 - -0.6 99,220 + -3.2 99,225 - +0.1 99,234 + -2.4 99,235 + +1.4 99,235 - +0.8 99,244 + -0.2 99,251 - -1.6 99,251 - +1.4 99,261 + +0.9 99,261 + +1.4 99,261 + -1.2 99,261 + +0.4 99,263 + -0.2 99,269 - +0.4 99,269 - -1.6 99,271 - +0.4 99,271 - +1.4 99,283 + -1.8 99,324 - Dshi_0101 0.17 -1.2 99,343 + Dshi_0101 0.24 +1.4 99,348 + Dshi_0101 0.26 +0.0 99,370 - Dshi_0101 0.34 -1.4 99,386 + Dshi_0101 0.41 -0.6 99,429 + Dshi_0101 0.57 -1.4 99,453 + Dshi_0101 0.67 +0.4 99,455 + Dshi_0101 0.67 +2.4 99,461 - Dshi_0101 0.70 +0.4 99,465 + Dshi_0101 0.71 -0.2 99,465 + Dshi_0101 0.71 +0.4 99,473 - Dshi_0101 0.74 -1.2 99,473 - Dshi_0101 0.74 +0.4 99,473 - Dshi_0101 0.74 -0.6 99,473 - Dshi_0101 0.74 +1.4 99,489 + Dshi_0101 0.81 +0.2 99,489 + Dshi_0101 0.81 +1.1 99,525 + -0.7 99,576 + -0.4 99,586 - +1.1 99,627 + +0.9 99,693 - +1.4 99,693 - -2.6 99,694 - +0.4 99,734 - -0.9 99,744 - -1.6 99,757 + -0.4 99,766 + -0.4 99,782 - +0.1 99,897 + -0.7 99,921 + -1.8 99,924 + +0.1 99,924 + -0.6 99,924 + +0.2 99,924 + +0.4 99,924 + -1.1 99,932 - -1.9 99,933 - +0.1 99,953 - -0.1 99,968 + +1.8 99,983 + +0.8 99,986 - -1.5 100,001 - +0.3 100,064 + -0.5 100,064 + -3.6 100,064 + -0.3 100,072 - -0.5 100,072 - -0.8 100,073 - +0.4 100,077 - +0.1 100,188 + Dshi_0102 0.12 -0.6 100,188 + Dshi_0102 0.12 -0.9 100,188 + Dshi_0102 0.12 -0.2 100,196 - Dshi_0102 0.12 +0.2 100,196 - Dshi_0102 0.12 +0.4 100,196 - Dshi_0102 0.12 -0.3 100,200 - Dshi_0102 0.12 +0.1 100,208 + Dshi_0102 0.12 +0.5 100,216 - Dshi_0102 0.13 +0.1 100,244 - Dshi_0102 0.14 +0.8 100,334 + Dshi_0102 0.17 +0.1 100,342 - Dshi_0102 0.17 +0.7 100,344 + Dshi_0102 0.17 +0.2 100,393 + Dshi_0102 0.19 -0.9 100,425 + Dshi_0102 0.20 -0.1 100,463 + Dshi_0102 0.21 -0.1 100,470 + Dshi_0102 0.21 -0.9 100,479 - Dshi_0102 0.21 -0.2
Or see this region's nucleotide sequence