Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0085

Experiment: m.b. Cephalothin 0.0001 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0083 and Dshi_0084 are separated by 37 nucleotidesDshi_0084 and Dshi_0085 are separated by 34 nucleotidesDshi_0085 and Dshi_0086 are separated by 311 nucleotides Dshi_0083: Dshi_0083 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 82,492 to 83,097 _0083 Dshi_0084: Dshi_0084 - hypothetical protein (RefSeq), at 83,135 to 83,662 _0084 Dshi_0085: Dshi_0085 - 3-isopropylmalate dehydratase, large subunit (RefSeq), at 83,697 to 85,100 _0085 Dshi_0086: Dshi_0086 - SOUL heme-binding protein (RefSeq), at 85,412 to 86,014 _0086 Position (kb) 83 84 85 86Strain fitness (log2 ratio) -2 -1 0 1at 83.016 kb on + strand, within Dshi_0083at 83.167 kb on - strandat 83.191 kb on - strand, within Dshi_0084at 83.213 kb on + strand, within Dshi_0084at 83.213 kb on - strand, within Dshi_0084at 83.213 kb on - strand, within Dshi_0084at 83.330 kb on - strand, within Dshi_0084at 83.341 kb on + strand, within Dshi_0084at 83.461 kb on - strand, within Dshi_0084at 83.473 kb on + strand, within Dshi_0084at 83.567 kb on + strand, within Dshi_0084at 83.688 kb on - strandat 84.190 kb on - strand, within Dshi_0085at 84.339 kb on + strand, within Dshi_0085at 85.053 kb on + strandat 85.292 kb on - strandat 85.305 kb on - strandat 85.319 kb on - strandat 85.333 kb on - strandat 85.333 kb on - strandat 85.366 kb on + strandat 85.367 kb on + strandat 85.374 kb on - strandat 85.378 kb on + strandat 85.427 kb on + strandat 85.433 kb on + strandat 85.446 kb on + strandat 85.465 kb on + strandat 85.562 kb on + strand, within Dshi_0086at 85.586 kb on + strand, within Dshi_0086at 85.656 kb on + strand, within Dshi_0086at 85.656 kb on + strand, within Dshi_0086at 85.666 kb on + strand, within Dshi_0086at 85.674 kb on - strand, within Dshi_0086at 85.683 kb on + strand, within Dshi_0086at 85.750 kb on + strand, within Dshi_0086at 85.815 kb on - strand, within Dshi_0086at 85.836 kb on - strand, within Dshi_0086at 85.843 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.917 kb on + strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.925 kb on - strand, within Dshi_0086at 85.971 kb on - strandat 85.972 kb on + strandat 85.980 kb on - strandat 85.980 kb on - strandat 85.994 kb on + strandat 86.033 kb on - strandat 86.052 kb on + strandat 86.055 kb on - strandat 86.081 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml
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83,016 + Dshi_0083 0.86 -0.2
83,167 - +1.6
83,191 - Dshi_0084 0.11 +0.2
83,213 + Dshi_0084 0.15 -0.4
83,213 - Dshi_0084 0.15 -0.0
83,213 - Dshi_0084 0.15 -1.2
83,330 - Dshi_0084 0.37 -0.4
83,341 + Dshi_0084 0.39 -0.4
83,461 - Dshi_0084 0.62 +0.1
83,473 + Dshi_0084 0.64 +0.4
83,567 + Dshi_0084 0.82 -0.1
83,688 - -0.3
84,190 - Dshi_0085 0.35 -0.4
84,339 + Dshi_0085 0.46 -1.8
85,053 + -0.2
85,292 - -1.0
85,305 - -0.2
85,319 - +0.6
85,333 - +0.4
85,333 - +1.0
85,366 + +0.7
85,367 + +0.4
85,374 - -0.2
85,378 + -1.8
85,427 + -0.2
85,433 + -0.6
85,446 + -0.2
85,465 + +0.8
85,562 + Dshi_0086 0.25 +0.7
85,586 + Dshi_0086 0.29 -0.4
85,656 + Dshi_0086 0.40 -0.3
85,656 + Dshi_0086 0.40 -0.1
85,666 + Dshi_0086 0.42 -0.2
85,674 - Dshi_0086 0.43 -0.7
85,683 + Dshi_0086 0.45 -0.4
85,750 + Dshi_0086 0.56 -0.0
85,815 - Dshi_0086 0.67 +0.1
85,836 - Dshi_0086 0.70 +0.4
85,843 + Dshi_0086 0.71 -0.8
85,917 + Dshi_0086 0.84 -1.4
85,917 + Dshi_0086 0.84 -0.4
85,917 + Dshi_0086 0.84 +0.0
85,925 - Dshi_0086 0.85 -0.3
85,925 - Dshi_0086 0.85 -0.6
85,925 - Dshi_0086 0.85 +0.4
85,925 - Dshi_0086 0.85 -0.9
85,925 - Dshi_0086 0.85 -0.5
85,925 - Dshi_0086 0.85 -1.8
85,925 - Dshi_0086 0.85 -0.5
85,925 - Dshi_0086 0.85 -0.2
85,925 - Dshi_0086 0.85 -0.0
85,925 - Dshi_0086 0.85 +0.5
85,971 - -0.1
85,972 + +0.7
85,980 - -0.3
85,980 - -0.7
85,994 + +0.5
86,033 - +1.0
86,052 + +0.6
86,055 - -0.9
86,081 - -0.6

Or see this region's nucleotide sequence