Experiment: m.b. Cephalothin 0.0001 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0035 and Dshi_0036 are separated by 73 nucleotides Dshi_0036 and Dshi_0037 are separated by 340 nucleotides
Dshi_0035: Dshi_0035 - Thioredoxin domain (RefSeq), at 37,578 to 38,489
_0035
Dshi_0036: Dshi_0036 - exodeoxyribonuclease III Xth (RefSeq), at 38,563 to 39,351
_0036
Dshi_0037: Dshi_0037 - LPXTG-motif cell wall anchor domain (RefSeq), at 39,692 to 40,216
_0037
Position (kb) 38
39
40 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 37.724 kb on + strand, within Dshi_0035 at 37.780 kb on - strand, within Dshi_0035 at 37.790 kb on - strand, within Dshi_0035 at 37.939 kb on + strand, within Dshi_0035 at 38.019 kb on - strand, within Dshi_0035 at 38.240 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.255 kb on - strand, within Dshi_0035 at 38.415 kb on - strand at 38.541 kb on + strand at 38.677 kb on + strand, within Dshi_0036 at 38.794 kb on - strand, within Dshi_0036 at 38.846 kb on + strand, within Dshi_0036 at 39.021 kb on - strand, within Dshi_0036 at 39.083 kb on + strand, within Dshi_0036 at 39.128 kb on - strand, within Dshi_0036 at 39.162 kb on - strand, within Dshi_0036 at 39.176 kb on - strand, within Dshi_0036 at 39.295 kb on - strand at 39.317 kb on + strand at 39.325 kb on - strand at 39.341 kb on + strand at 39.371 kb on - strand at 39.410 kb on + strand at 39.424 kb on - strand at 39.482 kb on + strand at 39.520 kb on - strand at 39.520 kb on - strand at 39.525 kb on - strand at 39.528 kb on + strand at 39.637 kb on - strand at 39.642 kb on - strand at 39.644 kb on - strand at 39.649 kb on + strand at 39.669 kb on + strand at 39.669 kb on + strand at 39.692 kb on - strand at 39.694 kb on + strand at 39.706 kb on + strand at 39.786 kb on - strand, within Dshi_0037 at 39.930 kb on + strand, within Dshi_0037 at 40.212 kb on + strand at 40.212 kb on + strand at 40.327 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Cephalothin 0.0001 mg/ml remove 37,724 + Dshi_0035 0.16 -1.3 37,780 - Dshi_0035 0.22 -1.0 37,790 - Dshi_0035 0.23 -2.3 37,939 + Dshi_0035 0.40 -0.9 38,019 - Dshi_0035 0.48 -1.4 38,240 - Dshi_0035 0.73 -0.9 38,255 - Dshi_0035 0.74 -0.3 38,255 - Dshi_0035 0.74 -2.1 38,255 - Dshi_0035 0.74 -0.3 38,415 - -1.0 38,541 + -0.1 38,677 + Dshi_0036 0.14 +0.4 38,794 - Dshi_0036 0.29 -0.0 38,846 + Dshi_0036 0.36 +1.1 39,021 - Dshi_0036 0.58 -0.2 39,083 + Dshi_0036 0.66 +0.1 39,128 - Dshi_0036 0.72 +0.4 39,162 - Dshi_0036 0.76 +0.2 39,176 - Dshi_0036 0.78 -0.5 39,295 - -0.8 39,317 + -1.2 39,325 - -0.8 39,341 + -0.9 39,371 - -0.8 39,410 + -0.6 39,424 - -0.6 39,482 + -0.7 39,520 - +0.2 39,520 - -0.2 39,525 - -0.1 39,528 + -1.3 39,637 - -0.7 39,642 - +0.0 39,644 - -0.1 39,649 + -1.2 39,669 + +2.1 39,669 + -0.1 39,692 - -1.3 39,694 + +3.7 39,706 + -0.8 39,786 - Dshi_0037 0.18 -0.4 39,930 + Dshi_0037 0.45 -1.2 40,212 + -0.5 40,212 + -0.3 40,327 + +0.1
Or see this region's nucleotide sequence