Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt tRNA-Val and tRNA-Asp are separated by 3 nucleotides tRNA-Asp and tRNA-Asp are separated by 71 nucleotides tRNA-Asp and DVU0276 are separated by 265 nucleotides DVU0276 and DORF26828 are separated by 147 nucleotides DORF26828 and DVU0277 are separated by 176 nucleotides
DVU_tRNA-Val-1: tRNA-Val - tRNA with anticodon CAC for Val (VIMSS-AUTO), at 318,835 to 318,910
tRNA-Val
DVU_tRNA-Asp-1: tRNA-Asp - tRNA with anticodon GTC for Asp (VIMSS-AUTO), at 318,914 to 318,990
tRNA-Asp
DVU_tRNA-Asp-2: tRNA-Asp - tRNA with anticodon GTC for Asp (VIMSS-AUTO), at 319,062 to 319,138
tRNA-Asp
DVU0276: DVU0276 - conserved hypothetical protein (TIGR), at 319,404 to 319,802
DVU0276
DORF26828: DORF26828 - SEED: FIG00605560: hypothetical protein, at 319,950 to 320,180
DORF26828
DVU0277: DVU0277 - transcriptional regulator, AraC family (TIGR), at 320,357 to 321,337
DVU0277
Position (kb) 319
320 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 318.424 kb on + strand at 318.462 kb on - strand at 318.585 kb on + strand at 318.585 kb on + strand at 318.593 kb on - strand at 318.667 kb on + strand at 318.667 kb on + strand at 318.677 kb on + strand at 318.685 kb on - strand at 318.692 kb on + strand at 318.779 kb on + strand at 319.161 kb on + strand at 319.265 kb on + strand at 319.364 kb on + strand at 319.394 kb on - strand at 319.401 kb on + strand at 319.411 kb on + strand at 319.411 kb on + strand at 319.419 kb on - strand at 319.458 kb on - strand, within DVU0276 at 319.474 kb on - strand, within DVU0276 at 319.476 kb on + strand, within DVU0276 at 319.553 kb on + strand, within DVU0276 at 319.563 kb on + strand, within DVU0276 at 319.568 kb on + strand, within DVU0276 at 319.583 kb on - strand, within DVU0276 at 319.587 kb on + strand, within DVU0276 at 319.595 kb on - strand, within DVU0276 at 319.605 kb on - strand, within DVU0276 at 319.619 kb on + strand, within DVU0276 at 319.640 kb on - strand, within DVU0276 at 319.658 kb on + strand, within DVU0276 at 319.658 kb on + strand, within DVU0276 at 319.697 kb on - strand, within DVU0276 at 319.711 kb on + strand, within DVU0276 at 319.715 kb on + strand, within DVU0276 at 319.723 kb on - strand, within DVU0276 at 319.723 kb on - strand, within DVU0276 at 319.734 kb on + strand, within DVU0276 at 319.734 kb on + strand, within DVU0276 at 319.743 kb on - strand, within DVU0276 at 319.779 kb on + strand at 319.787 kb on - strand at 319.787 kb on - strand at 319.789 kb on - strand at 319.843 kb on + strand at 319.843 kb on + strand at 319.848 kb on + strand at 319.856 kb on - strand at 319.856 kb on - strand at 320.024 kb on - strand, within DORF26828 at 320.026 kb on + strand, within DORF26828 at 320.034 kb on - strand, within DORF26828 at 320.051 kb on + strand, within DORF26828 at 320.115 kb on - strand, within DORF26828 at 320.209 kb on - strand at 320.245 kb on - strand at 320.245 kb on - strand at 320.304 kb on - strand at 320.341 kb on + strand at 320.346 kb on - strand at 320.375 kb on - strand at 320.465 kb on + strand, within DVU0277 at 320.505 kb on + strand, within DVU0277 at 320.516 kb on + strand, within DVU0277 at 320.524 kb on - strand, within DVU0277 at 320.524 kb on - strand, within DVU0277 at 320.711 kb on - strand, within DVU0277 at 320.719 kb on + strand, within DVU0277 at 320.722 kb on + strand, within DVU0277 at 320.780 kb on + strand, within DVU0277 at 320.783 kb on - strand, within DVU0277
Per-strain Table
Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract remove 318,424 + +0.7 318,462 - -0.4 318,585 + -0.7 318,585 + -0.8 318,593 - -0.2 318,667 + +0.5 318,667 + -1.3 318,677 + -0.2 318,685 - -0.4 318,692 + +0.2 318,779 + +0.3 319,161 + -0.9 319,265 + -0.2 319,364 + -0.1 319,394 - -0.2 319,401 + -0.3 319,411 + -0.1 319,411 + -4.0 319,419 - +0.0 319,458 - DVU0276 0.14 -0.6 319,474 - DVU0276 0.18 +1.1 319,476 + DVU0276 0.18 -0.0 319,553 + DVU0276 0.37 -0.0 319,563 + DVU0276 0.40 -2.1 319,568 + DVU0276 0.41 -0.8 319,583 - DVU0276 0.45 -0.4 319,587 + DVU0276 0.46 -3.0 319,595 - DVU0276 0.48 -0.9 319,605 - DVU0276 0.50 -0.5 319,619 + DVU0276 0.54 -0.3 319,640 - DVU0276 0.59 +0.2 319,658 + DVU0276 0.64 -0.1 319,658 + DVU0276 0.64 -0.4 319,697 - DVU0276 0.73 -0.3 319,711 + DVU0276 0.77 -0.2 319,715 + DVU0276 0.78 -0.6 319,723 - DVU0276 0.80 +2.0 319,723 - DVU0276 0.80 -1.8 319,734 + DVU0276 0.83 -0.5 319,734 + DVU0276 0.83 -0.9 319,743 - DVU0276 0.85 -1.4 319,779 + +0.0 319,787 - -1.0 319,787 - +0.2 319,789 - -0.3 319,843 + +0.7 319,843 + -0.9 319,848 + +0.7 319,856 - +0.3 319,856 - -1.0 320,024 - DORF26828 0.32 +0.3 320,026 + DORF26828 0.33 +0.2 320,034 - DORF26828 0.36 +0.1 320,051 + DORF26828 0.44 +0.5 320,115 - DORF26828 0.71 +0.7 320,209 - -0.3 320,245 - +0.6 320,245 - -0.7 320,304 - -0.8 320,341 + -0.0 320,346 - +1.3 320,375 - -0.1 320,465 + DVU0277 0.11 +0.8 320,505 + DVU0277 0.15 -2.1 320,516 + DVU0277 0.16 +1.7 320,524 - DVU0277 0.17 -0.4 320,524 - DVU0277 0.17 -0.4 320,711 - DVU0277 0.36 +0.3 320,719 + DVU0277 0.37 -1.8 320,722 + DVU0277 0.37 +0.7 320,780 + DVU0277 0.43 -0.6 320,783 - DVU0277 0.43 +1.7
Or see this region's nucleotide sequence