Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU3175

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntubiE and DVU3175 are separated by 266 nucleotidesDVU3175 and DVU3176 are separated by 133 nucleotides DVU3174: ubiE - ubiquinone/menaquinone biosynthesis methlytransferase UbiE (TIGR), at 3,330,876 to 3,331,652 ubiE DVU3175: DVU3175 - membrane protein, putative (TIGR), at 3,331,919 to 3,332,122 DVU3175 DVU3176: DVU3176 - UDP-glucose/GDP-mannose dehydrogenase family protein (TIGR), at 3,332,256 to 3,333,578 DVU3176 Position (kb) 3331 3332 3333Strain fitness (log2 ratio) -3 -2 -1 0 1at 3331.772 kb on + strandat 3331.772 kb on + strandat 3331.799 kb on - strandat 3331.846 kb on + strandat 3331.849 kb on - strandat 3331.917 kb on + strandat 3331.917 kb on + strandat 3331.917 kb on + strandat 3331.921 kb on + strandat 3331.954 kb on + strand, within DVU3175at 3331.985 kb on - strand, within DVU3175at 3331.999 kb on - strand, within DVU3175at 3332.058 kb on - strand, within DVU3175at 3332.150 kb on + strandat 3332.158 kb on - strandat 3332.241 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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3,331,772 + -3.1
3,331,772 + -0.3
3,331,799 - -0.0
3,331,846 + -0.2
3,331,849 - -0.7
3,331,917 + +1.3
3,331,917 + +0.7
3,331,917 + +0.0
3,331,921 + -0.3
3,331,954 + DVU3175 0.17 -1.1
3,331,985 - DVU3175 0.32 +0.4
3,331,999 - DVU3175 0.39 +0.6
3,332,058 - DVU3175 0.68 +0.7
3,332,150 + -0.9
3,332,158 - -0.6
3,332,241 - -0.1

Or see this region's nucleotide sequence