Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2283

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDVU2282 and DVU2283 are separated by 176 nucleotidesDVU2283 and DVU2284 are separated by 58 nucleotidesDVU2284 and DVU2285 are separated by 422 nucleotides DVU2282: DVU2282 - hypothetical protein (TIGR), at 2,372,404 to 2,373,954 DVU2282 DVU2283: DVU2283 - hypothetical protein (TIGR), at 2,374,131 to 2,374,232 DVU2283 DVU2284: DVU2284 - hypothetical protein (TIGR), at 2,374,291 to 2,374,803 DVU2284 DVU2285: DVU2285 - L-lactate permease family protein (TIGR), at 2,375,226 to 2,376,746 DVU2285 Position (kb) 2374 2375Strain fitness (log2 ratio) -2 -1 0 1 2at 2373.204 kb on + strand, within DVU2282at 2373.204 kb on + strand, within DVU2282at 2373.212 kb on - strand, within DVU2282at 2373.218 kb on - strand, within DVU2282at 2373.268 kb on + strand, within DVU2282at 2373.276 kb on - strand, within DVU2282at 2373.278 kb on - strand, within DVU2282at 2373.372 kb on + strand, within DVU2282at 2373.393 kb on + strand, within DVU2282at 2373.419 kb on + strand, within DVU2282at 2373.478 kb on - strand, within DVU2282at 2373.554 kb on - strand, within DVU2282at 2373.583 kb on - strand, within DVU2282at 2373.631 kb on + strand, within DVU2282at 2373.649 kb on + strand, within DVU2282at 2373.657 kb on - strand, within DVU2282at 2373.695 kb on + strand, within DVU2282at 2373.720 kb on - strand, within DVU2282at 2373.739 kb on + strand, within DVU2282at 2373.742 kb on - strand, within DVU2282at 2373.830 kb on + strandat 2373.933 kb on + strandat 2374.019 kb on + strandat 2374.111 kb on + strandat 2374.112 kb on - strandat 2374.136 kb on - strandat 2374.142 kb on + strand, within DVU2283at 2374.142 kb on + strand, within DVU2283at 2374.212 kb on - strand, within DVU2283at 2374.418 kb on - strand, within DVU2284at 2374.451 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.515 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.667 kb on + strand, within DVU2284at 2374.694 kb on - strand, within DVU2284at 2374.694 kb on - strand, within DVU2284at 2374.705 kb on + strand, within DVU2284at 2374.737 kb on - strand, within DVU2284at 2374.834 kb on + strandat 2374.998 kb on - strandat 2375.095 kb on + strandat 2375.135 kb on + strandat 2375.143 kb on - strandat 2375.223 kb on + strandat 2375.224 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
remove
2,373,204 + DVU2282 0.52 +0.5
2,373,204 + DVU2282 0.52 -0.6
2,373,212 - DVU2282 0.52 -0.4
2,373,218 - DVU2282 0.52 +1.0
2,373,268 + DVU2282 0.56 +0.4
2,373,276 - DVU2282 0.56 +0.0
2,373,278 - DVU2282 0.56 +2.6
2,373,372 + DVU2282 0.62 +0.4
2,373,393 + DVU2282 0.64 -2.4
2,373,419 + DVU2282 0.65 +0.3
2,373,478 - DVU2282 0.69 -0.6
2,373,554 - DVU2282 0.74 -0.0
2,373,583 - DVU2282 0.76 -1.6
2,373,631 + DVU2282 0.79 -0.2
2,373,649 + DVU2282 0.80 -0.6
2,373,657 - DVU2282 0.81 -0.6
2,373,695 + DVU2282 0.83 -0.7
2,373,720 - DVU2282 0.85 -0.8
2,373,739 + DVU2282 0.86 -0.6
2,373,742 - DVU2282 0.86 -0.4
2,373,830 + -0.4
2,373,933 + +1.0
2,374,019 + +0.0
2,374,111 + -0.1
2,374,112 - -0.2
2,374,136 - +0.0
2,374,142 + DVU2283 0.11 +1.0
2,374,142 + DVU2283 0.11 +0.6
2,374,212 - DVU2283 0.79 +1.1
2,374,418 - DVU2284 0.25 -0.6
2,374,451 + DVU2284 0.31 -0.9
2,374,515 + DVU2284 0.44 -0.1
2,374,515 + DVU2284 0.44 -0.2
2,374,515 + DVU2284 0.44 +0.1
2,374,667 + DVU2284 0.73 +0.7
2,374,667 + DVU2284 0.73 +1.4
2,374,667 + DVU2284 0.73 -0.1
2,374,694 - DVU2284 0.79 +0.0
2,374,694 - DVU2284 0.79 +1.2
2,374,705 + DVU2284 0.81 -0.4
2,374,737 - DVU2284 0.87 +0.7
2,374,834 + +1.4
2,374,998 - +0.0
2,375,095 + +0.3
2,375,135 + -0.2
2,375,143 - +0.3
2,375,223 + -0.2
2,375,224 - +0.1

Or see this region's nucleotide sequence