Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU2184

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU2183 and DVU2184 are separated by 34 nucleotidesDVU2184 and DVU2185 are separated by 3 nucleotides DVU2183: DVU2183 - hypothetical protein (TIGR), at 2,280,885 to 2,281,616 DVU2183 DVU2184: DVU2184 - DNA-binding domain, excisionase family (TIGR), at 2,281,651 to 2,281,869 DVU2184 DVU2185: DVU2185 - terminase, large subunit, putative (TIGR), at 2,281,873 to 2,283,798 DVU2185 Position (kb) 2281 2282Strain fitness (log2 ratio) -2 -1 0 1 2at 2280.682 kb on - strandat 2281.028 kb on - strand, within DVU2183at 2281.665 kb on - strandat 2281.713 kb on + strand, within DVU2184at 2281.805 kb on + strand, within DVU2184at 2281.818 kb on - strand, within DVU2184at 2281.823 kb on - strand, within DVU2184at 2281.823 kb on - strand, within DVU2184at 2281.828 kb on - strand, within DVU2184at 2281.865 kb on + strandat 2281.879 kb on + strandat 2281.915 kb on + strandat 2281.967 kb on - strandat 2282.026 kb on - strandat 2282.046 kb on - strandat 2282.059 kb on + strandat 2282.153 kb on + strand, within DVU2185at 2282.161 kb on - strand, within DVU2185at 2282.185 kb on - strand, within DVU2185at 2282.248 kb on + strand, within DVU2185at 2282.256 kb on - strand, within DVU2185at 2282.289 kb on + strand, within DVU2185at 2282.332 kb on + strand, within DVU2185at 2282.382 kb on + strand, within DVU2185at 2282.387 kb on + strand, within DVU2185at 2282.395 kb on - strand, within DVU2185at 2282.395 kb on - strand, within DVU2185at 2282.401 kb on - strand, within DVU2185at 2282.418 kb on - strand, within DVU2185at 2282.420 kb on + strand, within DVU2185at 2282.435 kb on + strand, within DVU2185at 2282.491 kb on + strand, within DVU2185at 2282.504 kb on + strand, within DVU2185at 2282.546 kb on + strand, within DVU2185at 2282.648 kb on + strand, within DVU2185at 2282.653 kb on + strand, within DVU2185at 2282.656 kb on - strand, within DVU2185at 2282.658 kb on + strand, within DVU2185at 2282.658 kb on + strand, within DVU2185at 2282.661 kb on - strand, within DVU2185at 2282.661 kb on - strand, within DVU2185at 2282.661 kb on - strand, within DVU2185at 2282.687 kb on + strand, within DVU2185at 2282.768 kb on + strand, within DVU2185at 2282.804 kb on + strand, within DVU2185at 2282.812 kb on - strand, within DVU2185

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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2,280,682 - -0.4
2,281,028 - DVU2183 0.20 -0.4
2,281,665 - +0.4
2,281,713 + DVU2184 0.28 +1.0
2,281,805 + DVU2184 0.70 -1.0
2,281,818 - DVU2184 0.76 -0.6
2,281,823 - DVU2184 0.79 +2.0
2,281,823 - DVU2184 0.79 +0.7
2,281,828 - DVU2184 0.81 +0.5
2,281,865 + -0.5
2,281,879 + -0.2
2,281,915 + -0.6
2,281,967 - -1.8
2,282,026 - -0.3
2,282,046 - -0.2
2,282,059 + +1.0
2,282,153 + DVU2185 0.15 -1.6
2,282,161 - DVU2185 0.15 +0.0
2,282,185 - DVU2185 0.16 -0.1
2,282,248 + DVU2185 0.19 -0.2
2,282,256 - DVU2185 0.20 -1.1
2,282,289 + DVU2185 0.22 -1.0
2,282,332 + DVU2185 0.24 +0.3
2,282,382 + DVU2185 0.26 +0.1
2,282,387 + DVU2185 0.27 +0.1
2,282,395 - DVU2185 0.27 -0.1
2,282,395 - DVU2185 0.27 -1.1
2,282,401 - DVU2185 0.27 -0.2
2,282,418 - DVU2185 0.28 -0.5
2,282,420 + DVU2185 0.28 -0.2
2,282,435 + DVU2185 0.29 -0.3
2,282,491 + DVU2185 0.32 -0.6
2,282,504 + DVU2185 0.33 +0.3
2,282,546 + DVU2185 0.35 -0.1
2,282,648 + DVU2185 0.40 +0.0
2,282,653 + DVU2185 0.40 -0.2
2,282,656 - DVU2185 0.41 -0.7
2,282,658 + DVU2185 0.41 -2.1
2,282,658 + DVU2185 0.41 +0.0
2,282,661 - DVU2185 0.41 -0.6
2,282,661 - DVU2185 0.41 -0.6
2,282,661 - DVU2185 0.41 -0.2
2,282,687 + DVU2185 0.42 -0.8
2,282,768 + DVU2185 0.46 +0.0
2,282,804 + DVU2185 0.48 -0.6
2,282,812 - DVU2185 0.49 +0.0

Or see this region's nucleotide sequence