Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1916

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDVU1914 and DVU1915 are separated by 41 nucleotidesDVU1915 and DVU1916 overlap by 23 nucleotidesDVU1916 and hysB are separated by 93 nucleotides DVU1914: DVU1914 - (R)-citramalate synthase (EC 2.3.3.21) (from data), at 1,988,931 to 1,990,547 DVU1914 DVU1915: DVU1915 - hypothetical protein (TIGR), at 1,990,589 to 1,990,864 DVU1915 DVU1916: DVU1916 - hypothetical protein (TIGR), at 1,990,842 to 1,990,973 DVU1916 DVU1917: hysB - periplasmic [NiFeSe] hydrogenase, small subunit (TIGR), at 1,991,067 to 1,992,020 hysB Position (kb) 1990 1991Strain fitness (log2 ratio) -2 -1 0 1 2at 1989.843 kb on + strand, within DVU1914at 1989.878 kb on - strand, within DVU1914at 1989.913 kb on + strand, within DVU1914at 1989.981 kb on - strand, within DVU1914at 1989.989 kb on + strand, within DVU1914at 1990.003 kb on - strand, within DVU1914at 1990.003 kb on - strand, within DVU1914at 1990.135 kb on + strand, within DVU1914at 1990.205 kb on - strand, within DVU1914at 1990.259 kb on + strand, within DVU1914at 1990.266 kb on + strand, within DVU1914at 1990.283 kb on + strand, within DVU1914at 1990.325 kb on - strand, within DVU1914at 1990.336 kb on + strand, within DVU1914at 1990.540 kb on - strandat 1990.947 kb on - strand, within DVU1916at 1991.079 kb on - strandat 1991.126 kb on - strandat 1991.251 kb on + strand, within hysBat 1991.251 kb on - strand, within hysBat 1991.402 kb on - strand, within hysBat 1991.735 kb on + strand, within hysBat 1991.779 kb on + strand, within hysBat 1991.834 kb on - strand, within hysBat 1991.834 kb on - strand, within hysBat 1991.929 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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1,989,843 + DVU1914 0.56 -0.3
1,989,878 - DVU1914 0.59 +0.2
1,989,913 + DVU1914 0.61 -0.9
1,989,981 - DVU1914 0.65 -0.1
1,989,989 + DVU1914 0.65 -0.9
1,990,003 - DVU1914 0.66 -0.5
1,990,003 - DVU1914 0.66 +0.3
1,990,135 + DVU1914 0.74 -0.3
1,990,205 - DVU1914 0.79 +2.1
1,990,259 + DVU1914 0.82 -0.1
1,990,266 + DVU1914 0.83 -0.2
1,990,283 + DVU1914 0.84 +0.1
1,990,325 - DVU1914 0.86 -0.7
1,990,336 + DVU1914 0.87 +0.4
1,990,540 - -0.6
1,990,947 - DVU1916 0.80 +0.2
1,991,079 - -0.9
1,991,126 - -1.9
1,991,251 + hysB DVU1917 0.19 -0.2
1,991,251 - hysB DVU1917 0.19 +0.1
1,991,402 - hysB DVU1917 0.35 -0.3
1,991,735 + hysB DVU1917 0.70 +1.1
1,991,779 + hysB DVU1917 0.75 +0.2
1,991,834 - hysB DVU1917 0.80 -0.2
1,991,834 - hysB DVU1917 0.80 -0.1
1,991,929 - -0.1

Or see this region's nucleotide sequence