Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1351

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntdxs and DVU1351 are separated by 242 nucleotidesDVU1351 and DVU1352 are separated by 129 nucleotidesDVU1352 and dnaE are separated by 1 nucleotides DVU1350: dxs - deoxyxylulose-5-phosphate synthase (TIGR), at 1,427,612 to 1,429,537 dxs DVU1351: DVU1351 - membrane protein, MarC family (TIGR), at 1,429,780 to 1,430,382 DVU1351 DVU1352: DVU1352 - 6-pyruvoyl tetrahydrobiopterin synthase, putative (TIGR), at 1,430,512 to 1,430,901 DVU1352 DVU1353: dnaE - DNA polymerase III, alpha subunit (TIGR), at 1,430,903 to 1,434,397 dnaE Position (kb) 1429 1430 1431Strain fitness (log2 ratio) -1 0 1at 1429.511 kb on + strandat 1429.590 kb on + strandat 1429.610 kb on - strandat 1429.610 kb on - strandat 1429.623 kb on - strandat 1429.654 kb on + strandat 1429.654 kb on + strandat 1429.662 kb on + strandat 1429.662 kb on - strandat 1429.662 kb on - strandat 1429.669 kb on + strandat 1429.705 kb on + strandat 1429.779 kb on + strandat 1429.842 kb on + strand, within DVU1351at 1429.902 kb on + strand, within DVU1351at 1429.982 kb on - strand, within DVU1351at 1429.998 kb on + strand, within DVU1351at 1430.020 kb on + strand, within DVU1351at 1430.379 kb on + strandat 1430.419 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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1,429,511 + -0.1
1,429,590 + +0.2
1,429,610 - +1.1
1,429,610 - +0.1
1,429,623 - +1.3
1,429,654 + +0.5
1,429,654 + -1.7
1,429,662 + -0.0
1,429,662 - +0.0
1,429,662 - -0.3
1,429,669 + +0.1
1,429,705 + -0.5
1,429,779 + -0.5
1,429,842 + DVU1351 0.10 +1.3
1,429,902 + DVU1351 0.20 -0.1
1,429,982 - DVU1351 0.33 +0.9
1,429,998 + DVU1351 0.36 +0.1
1,430,020 + DVU1351 0.40 +0.7
1,430,379 + -0.0
1,430,419 - -0.1

Or see this region's nucleotide sequence