Strain Fitness in Desulfovibrio vulgaris Hildenborough JW710 around DVU1193

Experiment: Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntlon and acyP overlap by 4 nucleotidesacyP and radC are separated by 8 nucleotidesradC and DVU1194 are separated by 35 nucleotides DVU1191: lon - ATP-dependent protease La, putative (TIGR), at 1,281,920 to 1,284,490 lon DVU1192: acyP - acylphosphatase (TIGR), at 1,284,487 to 1,284,789 acyP DVU1193: radC - DNA repair protein RadC (TIGR), at 1,284,798 to 1,285,475 radC DVU1194: DVU1194 - hypothetical protein (TIGR), at 1,285,511 to 1,286,500 DVU1194 Position (kb) 1284 1285 1286Strain fitness (log2 ratio) -2 -1 0 1at 1283.881 kb on - strand, within lonat 1283.904 kb on + strand, within lonat 1283.914 kb on + strand, within lonat 1283.978 kb on - strand, within lonat 1284.088 kb on - strand, within lonat 1284.090 kb on + strand, within lonat 1284.098 kb on - strand, within lonat 1284.119 kb on - strand, within lonat 1284.242 kb on + strandat 1284.250 kb on - strandat 1284.267 kb on + strandat 1284.275 kb on - strandat 1284.449 kb on + strandat 1284.634 kb on + strand, within acyPat 1284.661 kb on - strand, within acyPat 1284.709 kb on + strand, within acyPat 1284.748 kb on + strand, within acyPat 1285.025 kb on - strand, within radCat 1285.159 kb on + strand, within radCat 1285.271 kb on + strand, within radCat 1285.411 kb on - strandat 1285.516 kb on - strandat 1285.534 kb on + strandat 1285.564 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Pyruvate-Thiosulfate (60-15 mM) + 0.1% Yeast Extract
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1,283,881 - lon DVU1191 0.76 -0.3
1,283,904 + lon DVU1191 0.77 -1.8
1,283,914 + lon DVU1191 0.78 -1.3
1,283,978 - lon DVU1191 0.80 +1.4
1,284,088 - lon DVU1191 0.84 -1.6
1,284,090 + lon DVU1191 0.84 -2.2
1,284,098 - lon DVU1191 0.85 -1.6
1,284,119 - lon DVU1191 0.86 -0.8
1,284,242 + -0.9
1,284,250 - -1.4
1,284,267 + -1.8
1,284,275 - -0.3
1,284,449 + +1.1
1,284,634 + acyP DVU1192 0.49 -0.2
1,284,661 - acyP DVU1192 0.57 -1.5
1,284,709 + acyP DVU1192 0.73 +0.6
1,284,748 + acyP DVU1192 0.86 -0.0
1,285,025 - radC DVU1193 0.33 +0.4
1,285,159 + radC DVU1193 0.53 +0.4
1,285,271 + radC DVU1193 0.70 -0.1
1,285,411 - +0.1
1,285,516 - +1.1
1,285,534 + +0.2
1,285,564 - -0.3

Or see this region's nucleotide sequence