Experiment: Day2 TSB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SM_b20428 and SM_b20429 are separated by 102 nucleotides SM_b20429 and SM_b20430 are separated by 2 nucleotides SM_b20430 and SM_b20431 overlap by 1 nucleotides
SM_b20428: SM_b20428 - amino acid ABC transporter substrate-binding protein, at 443,289 to 444,140
_b20428
SM_b20429: SM_b20429 - amino acid ABC transporter permease, at 444,243 to 444,902
_b20429
SM_b20430: SM_b20430 - amino acid ABC transporter permease, at 444,905 to 445,567
_b20430
SM_b20431: SM_b20431 - arylmalonate decarboxylase, at 445,567 to 446,352
_b20431
Position (kb) 444
445 Strain fitness (log2 ratio) -1
0
1 at 443.441 kb on + strand, within SM_b20428 at 443.547 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.712 kb on + strand, within SM_b20428 at 443.874 kb on + strand, within SM_b20428 at 443.967 kb on + strand, within SM_b20428 at 444.078 kb on + strand at 444.139 kb on - strand at 444.261 kb on + strand at 444.262 kb on - strand at 444.402 kb on + strand, within SM_b20429 at 444.402 kb on + strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.403 kb on - strand, within SM_b20429 at 444.404 kb on + strand, within SM_b20429 at 444.428 kb on + strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.429 kb on - strand, within SM_b20429 at 444.453 kb on + strand, within SM_b20429 at 444.454 kb on - strand, within SM_b20429 at 444.478 kb on + strand, within SM_b20429 at 444.479 kb on - strand, within SM_b20429 at 444.535 kb on - strand, within SM_b20429 at 444.816 kb on + strand, within SM_b20429 at 444.817 kb on - strand, within SM_b20429 at 445.118 kb on + strand, within SM_b20430 at 445.129 kb on - strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.130 kb on + strand, within SM_b20430 at 445.131 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.209 kb on - strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.223 kb on + strand, within SM_b20430 at 445.224 kb on - strand, within SM_b20430 at 445.305 kb on + strand, within SM_b20430 at 445.359 kb on - strand, within SM_b20430 at 445.447 kb on + strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.448 kb on - strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.451 kb on + strand, within SM_b20430 at 445.452 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.458 kb on - strand, within SM_b20430 at 445.498 kb on + strand, within SM_b20430 at 445.633 kb on - strand at 445.669 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.721 kb on - strand, within SM_b20431 at 445.739 kb on - strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.840 kb on + strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431 at 445.841 kb on - strand, within SM_b20431
Per-strain Table
Position Strand Gene LocusTag Fraction Day2 TSB remove 443,441 + SM_b20428 0.18 +0.0 443,547 + SM_b20428 0.30 +0.1 443,712 + SM_b20428 0.50 -0.1 443,712 + SM_b20428 0.50 +0.1 443,874 + SM_b20428 0.69 +0.5 443,967 + SM_b20428 0.80 +0.0 444,078 + +0.0 444,139 - +0.0 444,261 + -0.1 444,262 - -0.0 444,402 + SM_b20429 0.24 -0.5 444,402 + SM_b20429 0.24 -0.2 444,403 - SM_b20429 0.24 -0.4 444,403 - SM_b20429 0.24 -0.6 444,403 - SM_b20429 0.24 -0.2 444,404 + SM_b20429 0.24 -0.6 444,428 + SM_b20429 0.28 +0.0 444,429 - SM_b20429 0.28 -1.2 444,429 - SM_b20429 0.28 -0.0 444,453 + SM_b20429 0.32 -1.0 444,454 - SM_b20429 0.32 -0.1 444,478 + SM_b20429 0.36 -0.5 444,479 - SM_b20429 0.36 +0.0 444,535 - SM_b20429 0.44 -0.6 444,816 + SM_b20429 0.87 -0.6 444,817 - SM_b20429 0.87 +0.1 445,118 + SM_b20430 0.32 -0.2 445,129 - SM_b20430 0.34 +0.5 445,130 + SM_b20430 0.34 +0.1 445,130 + SM_b20430 0.34 +0.8 445,131 - SM_b20430 0.34 -0.0 445,209 - SM_b20430 0.46 +0.2 445,209 - SM_b20430 0.46 +1.0 445,209 - SM_b20430 0.46 +0.2 445,223 + SM_b20430 0.48 -0.2 445,223 + SM_b20430 0.48 +0.0 445,224 - SM_b20430 0.48 -0.5 445,305 + SM_b20430 0.60 +0.2 445,359 - SM_b20430 0.68 -1.4 445,447 + SM_b20430 0.82 +0.1 445,448 - SM_b20430 0.82 -0.4 445,448 - SM_b20430 0.82 +0.0 445,451 + SM_b20430 0.82 -0.3 445,451 + SM_b20430 0.82 +0.1 445,452 - SM_b20430 0.83 -0.2 445,458 - SM_b20430 0.83 -0.0 445,458 - SM_b20430 0.83 -0.5 445,498 + SM_b20430 0.89 +0.1 445,633 - -0.5 445,669 - SM_b20431 0.13 -0.1 445,721 - SM_b20431 0.20 -0.7 445,721 - SM_b20431 0.20 -0.2 445,739 - SM_b20431 0.22 -0.2 445,840 + SM_b20431 0.35 -0.1 445,840 + SM_b20431 0.35 +0.3 445,841 - SM_b20431 0.35 -0.1 445,841 - SM_b20431 0.35 +0.1
Or see this region's nucleotide sequence