Strain Fitness in Ralstonia solanacearum IBSBF1503 around RALBFv3_RS15710

Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRALBFv3_RS15705 and RALBFv3_RS15710 are separated by 51 nucleotidesRALBFv3_RS15710 and RALBFv3_RS15715 are separated by 321 nucleotides RALBFv3_RS15705: RALBFv3_RS15705 - RND transporter, at 3,424,409 to 3,425,956 _RS15705 RALBFv3_RS15710: RALBFv3_RS15710 - MarR family transcriptional regulator, at 3,426,008 to 3,426,451 _RS15710 RALBFv3_RS15715: RALBFv3_RS15715 - translational GTPase TypA, at 3,426,773 to 3,428,593 _RS15715 Position (kb) 3426 3427Strain fitness (log2 ratio) -1 0 1 2at 3425.328 kb on + strand, within RALBFv3_RS15705at 3425.373 kb on - strand, within RALBFv3_RS15705at 3425.545 kb on - strand, within RALBFv3_RS15705at 3425.595 kb on + strand, within RALBFv3_RS15705at 3426.134 kb on - strand, within RALBFv3_RS15710at 3426.134 kb on - strand, within RALBFv3_RS15710at 3426.134 kb on - strand, within RALBFv3_RS15710at 3426.135 kb on + strand, within RALBFv3_RS15710at 3426.433 kb on - strandat 3426.524 kb on - strandat 3426.554 kb on + strandat 3426.624 kb on + strandat 3426.624 kb on + strandat 3427.260 kb on - strand, within RALBFv3_RS15715

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
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3,425,328 + RALBFv3_RS15705 0.59 +0.0
3,425,373 - RALBFv3_RS15705 0.62 +1.0
3,425,545 - RALBFv3_RS15705 0.73 -0.4
3,425,595 + RALBFv3_RS15705 0.77 +0.0
3,426,134 - RALBFv3_RS15710 0.28 +2.0
3,426,134 - RALBFv3_RS15710 0.28 -0.7
3,426,134 - RALBFv3_RS15710 0.28 -0.3
3,426,135 + RALBFv3_RS15710 0.29 -0.7
3,426,433 - +1.8
3,426,524 - -0.3
3,426,554 + +2.0
3,426,624 + -0.8
3,426,624 + -0.3
3,427,260 - RALBFv3_RS15715 0.27 +1.0

Or see this region's nucleotide sequence