Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS03055 and RALBFv3_RS03060 overlap by 4 nucleotides RALBFv3_RS03060 and RALBFv3_RS03065 are separated by 10 nucleotides RALBFv3_RS03065 and RALBFv3_RS03070 are separated by 102 nucleotides RALBFv3_RS03070 and RALBFv3_RS03075 are separated by 25 nucleotides
RALBFv3_RS03055: RALBFv3_RS03055 - RNA polymerase sigma factor, at 671,554 to 672,120
_RS03055
RALBFv3_RS03060: RALBFv3_RS03060 - DUF3619 domain-containing protein, at 672,117 to 672,557
_RS03060
RALBFv3_RS03065: RALBFv3_RS03065 - DUF3106 domain-containing protein, at 672,568 to 673,425
_RS03065
RALBFv3_RS03070: RALBFv3_RS03070 - RDD family protein, at 673,528 to 674,058
_RS03070
RALBFv3_RS03075: RALBFv3_RS03075 - permease, at 674,084 to 675,103
_RS03075
Position (kb) 672
673
674 Strain fitness (log2 ratio) -2
-1
0
1 at 671.905 kb on + strand, within RALBFv3_RS03055 at 671.906 kb on - strand, within RALBFv3_RS03055 at 671.906 kb on - strand, within RALBFv3_RS03055 at 672.116 kb on + strand at 672.358 kb on + strand, within RALBFv3_RS03060 at 672.370 kb on + strand, within RALBFv3_RS03060 at 672.371 kb on - strand, within RALBFv3_RS03060 at 672.430 kb on - strand, within RALBFv3_RS03060 at 672.430 kb on - strand, within RALBFv3_RS03060 at 672.537 kb on + strand at 672.555 kb on + strand at 672.556 kb on - strand at 673.010 kb on - strand, within RALBFv3_RS03065 at 673.063 kb on + strand, within RALBFv3_RS03065 at 673.063 kb on + strand, within RALBFv3_RS03065 at 673.063 kb on + strand, within RALBFv3_RS03065 at 673.064 kb on - strand, within RALBFv3_RS03065 at 673.264 kb on - strand, within RALBFv3_RS03065 at 673.599 kb on - strand, within RALBFv3_RS03070 at 673.625 kb on - strand, within RALBFv3_RS03070 at 673.625 kb on - strand, within RALBFv3_RS03070 at 673.625 kb on - strand, within RALBFv3_RS03070 at 673.760 kb on - strand, within RALBFv3_RS03070 at 673.873 kb on + strand, within RALBFv3_RS03070 at 674.048 kb on + strand at 674.196 kb on - strand, within RALBFv3_RS03075
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 671,905 + RALBFv3_RS03055 0.62 -0.4 671,906 - RALBFv3_RS03055 0.62 -1.1 671,906 - RALBFv3_RS03055 0.62 -0.1 672,116 + +0.5 672,358 + RALBFv3_RS03060 0.55 -0.3 672,370 + RALBFv3_RS03060 0.57 -2.1 672,371 - RALBFv3_RS03060 0.58 -2.2 672,430 - RALBFv3_RS03060 0.71 -1.3 672,430 - RALBFv3_RS03060 0.71 -1.4 672,537 + -2.2 672,555 + -0.0 672,556 - +0.0 673,010 - RALBFv3_RS03065 0.52 -2.2 673,063 + RALBFv3_RS03065 0.58 -2.3 673,063 + RALBFv3_RS03065 0.58 -2.6 673,063 + RALBFv3_RS03065 0.58 -0.6 673,064 - RALBFv3_RS03065 0.58 -0.2 673,264 - RALBFv3_RS03065 0.81 +0.4 673,599 - RALBFv3_RS03070 0.13 -0.5 673,625 - RALBFv3_RS03070 0.18 -1.6 673,625 - RALBFv3_RS03070 0.18 +0.6 673,625 - RALBFv3_RS03070 0.18 -0.7 673,760 - RALBFv3_RS03070 0.44 +1.3 673,873 + RALBFv3_RS03070 0.65 +0.0 674,048 + -0.3 674,196 - RALBFv3_RS03075 0.11 -1.6
Or see this region's nucleotide sequence