Experiment: Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RALBFv3_RS00035 and RALBFv3_RS00040 are separated by 31 nucleotides RALBFv3_RS00040 and RALBFv3_RS00045 are separated by 131 nucleotides RALBFv3_RS00045 and RALBFv3_RS00050 are separated by 32 nucleotides
RALBFv3_RS00035: RALBFv3_RS00035 - sulfate ABC transporter substrate-binding protein, at 7,458 to 8,471
_RS00035
RALBFv3_RS00040: RALBFv3_RS00040 - FMN reductase (NADPH), at 8,503 to 9,162
_RS00040
RALBFv3_RS00045: RALBFv3_RS00045 - sulfonate ABC transporter substrate-binding protein, at 9,294 to 10,307
_RS00045
RALBFv3_RS00050: RALBFv3_RS00050 - aliphatic sulfonate ABC transporter substrate-binding protein, at 10,340 to 11,371
_RS00050
Position (kb) 9
10
11 Strain fitness (log2 ratio) -1
0
1
2 at 8.451 kb on + strand at 8.469 kb on + strand at 8.470 kb on - strand at 8.732 kb on - strand, within RALBFv3_RS00040 at 8.743 kb on + strand, within RALBFv3_RS00040 at 8.926 kb on - strand, within RALBFv3_RS00040 at 9.436 kb on - strand, within RALBFv3_RS00045 at 9.444 kb on + strand, within RALBFv3_RS00045 at 9.765 kb on + strand, within RALBFv3_RS00045 at 9.805 kb on - strand, within RALBFv3_RS00045 at 9.805 kb on - strand, within RALBFv3_RS00045 at 10.153 kb on - strand, within RALBFv3_RS00045 at 10.694 kb on + strand, within RALBFv3_RS00050 at 10.881 kb on - strand, within RALBFv3_RS00050 at 10.953 kb on - strand, within RALBFv3_RS00050 at 10.955 kb on + strand, within RALBFv3_RS00050 at 10.955 kb on + strand, within RALBFv3_RS00050 at 11.031 kb on - strand, within RALBFv3_RS00050
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Impatiens cv. Orange Beacon; PreTreatment=None; PlantTreatment=None; Sample=Stem; Time=4days remove 8,451 + +2.5 8,469 + +2.0 8,470 - -0.9 8,732 - RALBFv3_RS00040 0.35 -0.4 8,743 + RALBFv3_RS00040 0.36 +1.0 8,926 - RALBFv3_RS00040 0.64 +0.9 9,436 - RALBFv3_RS00045 0.14 -0.4 9,444 + RALBFv3_RS00045 0.15 -0.0 9,765 + RALBFv3_RS00045 0.46 -0.8 9,805 - RALBFv3_RS00045 0.50 +1.8 9,805 - RALBFv3_RS00045 0.50 +0.6 10,153 - RALBFv3_RS00045 0.85 -1.1 10,694 + RALBFv3_RS00050 0.34 -0.4 10,881 - RALBFv3_RS00050 0.52 -0.2 10,953 - RALBFv3_RS00050 0.59 +0.1 10,955 + RALBFv3_RS00050 0.60 +0.6 10,955 + RALBFv3_RS00050 0.60 -0.3 11,031 - RALBFv3_RS00050 0.67 -0.2
Or see this region's nucleotide sequence