Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05938

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05937 and H281DRAFT_05938 are separated by 12 nucleotidesH281DRAFT_05938 and H281DRAFT_05939 are separated by 158 nucleotides H281DRAFT_05937: H281DRAFT_05937 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 77,187 to 77,927 _05937 H281DRAFT_05938: H281DRAFT_05938 - hypothetical protein, at 77,940 to 78,152 _05938 H281DRAFT_05939: H281DRAFT_05939 - Transcriptional regulator GlxA family, contains an amidase domain and an AraC-type DNA-binding HTH domain, at 78,311 to 79,264 _05939 Position (kb) 77 78 79Strain fitness (log2 ratio) -1 0 1at 77.132 kb on + strandat 77.133 kb on - strandat 77.270 kb on + strand, within H281DRAFT_05937at 77.271 kb on - strand, within H281DRAFT_05937at 77.272 kb on + strand, within H281DRAFT_05937at 77.273 kb on - strand, within H281DRAFT_05937at 77.276 kb on + strand, within H281DRAFT_05937at 77.551 kb on - strand, within H281DRAFT_05937at 78.566 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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77,132 + -0.3
77,133 - +0.4
77,270 + H281DRAFT_05937 0.11 +0.2
77,271 - H281DRAFT_05937 0.11 +1.5
77,272 + H281DRAFT_05937 0.11 -0.7
77,273 - H281DRAFT_05937 0.12 +0.0
77,276 + H281DRAFT_05937 0.12 -0.4
77,551 - H281DRAFT_05937 0.49 -0.7
78,566 - -0.3

Or see this region's nucleotide sequence