Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05778

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05776 and H281DRAFT_05777 overlap by 1 nucleotidesH281DRAFT_05777 and H281DRAFT_05778 overlap by 4 nucleotidesH281DRAFT_05778 and H281DRAFT_05779 overlap by 8 nucleotides H281DRAFT_05776: H281DRAFT_05776 - flagellar biosynthetic protein FliP, at 50,103 to 50,936 _05776 H281DRAFT_05777: H281DRAFT_05777 - flagellar protein FliO/FliZ, at 50,936 to 51,547 _05777 H281DRAFT_05778: H281DRAFT_05778 - flagellar motor switch protein FliN/FliY, at 51,544 to 52,011 _05778 H281DRAFT_05779: H281DRAFT_05779 - flagellar motor switch protein FliM, at 52,004 to 53,002 _05779 Position (kb) 51 52 53Strain fitness (log2 ratio) -1 0 1 2at 50.725 kb on + strand, within H281DRAFT_05776at 50.725 kb on + strand, within H281DRAFT_05776at 51.050 kb on - strand, within H281DRAFT_05777at 51.050 kb on - strand, within H281DRAFT_05777at 51.124 kb on + strand, within H281DRAFT_05777at 51.124 kb on + strand, within H281DRAFT_05777at 51.579 kb on + strandat 51.580 kb on - strandat 51.580 kb on - strandat 51.600 kb on + strand, within H281DRAFT_05778at 52.195 kb on + strand, within H281DRAFT_05779at 52.195 kb on + strand, within H281DRAFT_05779at 52.195 kb on + strand, within H281DRAFT_05779at 52.195 kb on + strand, within H281DRAFT_05779at 52.467 kb on + strand, within H281DRAFT_05779at 52.468 kb on - strand, within H281DRAFT_05779at 52.510 kb on - strand, within H281DRAFT_05779at 52.510 kb on - strand, within H281DRAFT_05779at 52.510 kb on - strand, within H281DRAFT_05779at 52.737 kb on + strand, within H281DRAFT_05779at 52.737 kb on + strand, within H281DRAFT_05779at 52.890 kb on + strand, within H281DRAFT_05779at 52.898 kb on + strand, within H281DRAFT_05779at 52.898 kb on + strand, within H281DRAFT_05779at 52.898 kb on + strand, within H281DRAFT_05779at 52.899 kb on - strand, within H281DRAFT_05779at 52.899 kb on - strand, within H281DRAFT_05779at 52.905 kb on - strandat 53.007 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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50,725 + H281DRAFT_05776 0.75 +0.7
50,725 + H281DRAFT_05776 0.75 +0.9
51,050 - H281DRAFT_05777 0.19 +0.3
51,050 - H281DRAFT_05777 0.19 +0.4
51,124 + H281DRAFT_05777 0.31 +0.8
51,124 + H281DRAFT_05777 0.31 +0.8
51,579 + +2.2
51,580 - +0.3
51,580 - +0.1
51,600 + H281DRAFT_05778 0.12 +0.6
52,195 + H281DRAFT_05779 0.19 +0.8
52,195 + H281DRAFT_05779 0.19 +1.0
52,195 + H281DRAFT_05779 0.19 +0.7
52,195 + H281DRAFT_05779 0.19 +0.4
52,467 + H281DRAFT_05779 0.46 +0.1
52,468 - H281DRAFT_05779 0.46 -0.2
52,510 - H281DRAFT_05779 0.51 +0.6
52,510 - H281DRAFT_05779 0.51 +0.7
52,510 - H281DRAFT_05779 0.51 +0.7
52,737 + H281DRAFT_05779 0.73 +0.7
52,737 + H281DRAFT_05779 0.73 +0.7
52,890 + H281DRAFT_05779 0.89 -0.1
52,898 + H281DRAFT_05779 0.89 +1.8
52,898 + H281DRAFT_05779 0.89 +0.4
52,898 + H281DRAFT_05779 0.89 +0.3
52,899 - H281DRAFT_05779 0.90 -0.2
52,899 - H281DRAFT_05779 0.90 +0.3
52,905 - +0.1
53,007 + +1.7

Or see this region's nucleotide sequence