Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_05260

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_05259 and H281DRAFT_05260 are separated by 196 nucleotidesH281DRAFT_05260 and H281DRAFT_05261 are separated by 139 nucleotidesH281DRAFT_05261 and H281DRAFT_05262 are separated by 152 nucleotides H281DRAFT_05259: H281DRAFT_05259 - transcriptional regulator, LysR family, at 351 to 1,346 _05259 H281DRAFT_05260: H281DRAFT_05260 - Uncharacterized membrane protein YccC, at 1,543 to 3,708 _05260 H281DRAFT_05261: H281DRAFT_05261 - hypothetical protein, at 3,848 to 4,060 _05261 H281DRAFT_05262: H281DRAFT_05262 - succinyl-CoA:acetate CoA-transferase, at 4,213 to 5,727 _05262 Position (kb) 1 2 3 4Strain fitness (log2 ratio) -1 0 1 2 3at 0.562 kb on + strand, within H281DRAFT_05259at 0.639 kb on + strand, within H281DRAFT_05259at 0.677 kb on + strand, within H281DRAFT_05259at 0.765 kb on - strand, within H281DRAFT_05259at 0.833 kb on - strand, within H281DRAFT_05259at 0.852 kb on + strand, within H281DRAFT_05259at 0.853 kb on - strand, within H281DRAFT_05259at 0.866 kb on + strand, within H281DRAFT_05259at 0.966 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.030 kb on + strand, within H281DRAFT_05259at 1.031 kb on - strand, within H281DRAFT_05259at 1.031 kb on - strand, within H281DRAFT_05259at 1.056 kb on - strand, within H281DRAFT_05259at 1.061 kb on + strand, within H281DRAFT_05259at 1.132 kb on - strand, within H281DRAFT_05259at 1.153 kb on + strand, within H281DRAFT_05259at 1.169 kb on + strand, within H281DRAFT_05259at 1.211 kb on + strand, within H281DRAFT_05259at 1.212 kb on - strand, within H281DRAFT_05259at 1.290 kb on - strandat 1.335 kb on + strandat 1.335 kb on + strandat 1.340 kb on + strandat 1.375 kb on + strandat 1.375 kb on + strandat 1.376 kb on - strandat 1.464 kb on + strandat 1.667 kb on + strandat 1.667 kb on + strandat 1.667 kb on + strandat 2.126 kb on + strand, within H281DRAFT_05260at 2.507 kb on + strand, within H281DRAFT_05260at 2.550 kb on - strand, within H281DRAFT_05260at 2.550 kb on - strand, within H281DRAFT_05260at 2.616 kb on - strand, within H281DRAFT_05260at 2.645 kb on - strand, within H281DRAFT_05260at 2.656 kb on + strand, within H281DRAFT_05260at 2.657 kb on - strand, within H281DRAFT_05260at 2.710 kb on + strand, within H281DRAFT_05260at 2.947 kb on + strand, within H281DRAFT_05260at 2.947 kb on + strand, within H281DRAFT_05260at 2.947 kb on + strand, within H281DRAFT_05260at 3.443 kb on - strand, within H281DRAFT_05260at 3.716 kb on - strandat 3.802 kb on + strandat 3.803 kb on - strandat 3.803 kb on - strandat 4.047 kb on - strandat 4.058 kb on + strandat 4.061 kb on + strandat 4.062 kb on - strandat 4.252 kb on - strandat 4.288 kb on - strandat 4.288 kb on - strandat 4.641 kb on - strand, within H281DRAFT_05262

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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562 + H281DRAFT_05259 0.21 +2.2
639 + H281DRAFT_05259 0.29 +1.4
677 + H281DRAFT_05259 0.33 +1.6
765 - H281DRAFT_05259 0.42 +1.8
833 - H281DRAFT_05259 0.48 +2.2
852 + H281DRAFT_05259 0.50 +1.5
853 - H281DRAFT_05259 0.50 +1.7
866 + H281DRAFT_05259 0.52 +1.9
966 + H281DRAFT_05259 0.62 +2.4
1,030 + H281DRAFT_05259 0.68 +2.3
1,030 + H281DRAFT_05259 0.68 +2.6
1,030 + H281DRAFT_05259 0.68 +2.0
1,031 - H281DRAFT_05259 0.68 +2.0
1,031 - H281DRAFT_05259 0.68 +2.1
1,056 - H281DRAFT_05259 0.71 +2.4
1,061 + H281DRAFT_05259 0.71 +2.7
1,132 - H281DRAFT_05259 0.78 +2.6
1,153 + H281DRAFT_05259 0.81 +2.2
1,169 + H281DRAFT_05259 0.82 +2.7
1,211 + H281DRAFT_05259 0.86 +1.9
1,212 - H281DRAFT_05259 0.86 +2.5
1,290 - +2.3
1,335 + +2.3
1,335 + +3.3
1,340 + +1.9
1,375 + +1.8
1,375 + +2.0
1,376 - -0.2
1,464 + -0.0
1,667 + -0.3
1,667 + +0.7
1,667 + +0.5
2,126 + H281DRAFT_05260 0.27 +2.0
2,507 + H281DRAFT_05260 0.45 +0.5
2,550 - H281DRAFT_05260 0.46 +0.9
2,550 - H281DRAFT_05260 0.46 -0.3
2,616 - H281DRAFT_05260 0.50 +0.7
2,645 - H281DRAFT_05260 0.51 +1.3
2,656 + H281DRAFT_05260 0.51 +0.1
2,657 - H281DRAFT_05260 0.51 +0.3
2,710 + H281DRAFT_05260 0.54 +1.4
2,947 + H281DRAFT_05260 0.65 +0.4
2,947 + H281DRAFT_05260 0.65 +0.8
2,947 + H281DRAFT_05260 0.65 +0.1
3,443 - H281DRAFT_05260 0.88 +0.9
3,716 - +0.8
3,802 + +0.1
3,803 - -0.9
3,803 - -0.9
4,047 - -1.0
4,058 + +0.2
4,061 + -1.0
4,062 - +1.6
4,252 - -0.0
4,288 - +0.7
4,288 - +0.4
4,641 - H281DRAFT_05262 0.28 +0.2

Or see this region's nucleotide sequence