Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04447

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04446 and H281DRAFT_04447 are separated by 221 nucleotidesH281DRAFT_04447 and H281DRAFT_04448 are separated by 480 nucleotides H281DRAFT_04446: H281DRAFT_04446 - transcriptional regulator, LysR family, at 166,317 to 167,276 _04446 H281DRAFT_04447: H281DRAFT_04447 - Uncharacterised MFS-type transporter YbfB, at 167,498 to 169,060 _04447 H281DRAFT_04448: H281DRAFT_04448 - L-threonine aldolase, at 169,541 to 170,572 _04448 Position (kb) 167 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 166.612 kb on + strand, within H281DRAFT_04446at 166.613 kb on - strand, within H281DRAFT_04446at 166.613 kb on - strand, within H281DRAFT_04446at 166.660 kb on + strand, within H281DRAFT_04446at 166.676 kb on - strand, within H281DRAFT_04446at 166.676 kb on - strand, within H281DRAFT_04446at 167.132 kb on + strand, within H281DRAFT_04446at 167.339 kb on + strandat 167.339 kb on + strandat 167.339 kb on + strandat 167.340 kb on - strandat 167.340 kb on - strandat 167.342 kb on + strandat 167.342 kb on + strandat 167.343 kb on - strandat 167.343 kb on - strandat 167.343 kb on - strandat 167.348 kb on + strandat 167.348 kb on + strandat 167.349 kb on - strandat 167.349 kb on - strandat 167.542 kb on + strandat 167.542 kb on + strandat 167.681 kb on + strand, within H281DRAFT_04447at 167.691 kb on - strand, within H281DRAFT_04447at 167.760 kb on + strand, within H281DRAFT_04447at 167.761 kb on - strand, within H281DRAFT_04447at 167.761 kb on - strand, within H281DRAFT_04447at 167.931 kb on - strand, within H281DRAFT_04447at 168.124 kb on - strand, within H281DRAFT_04447at 168.124 kb on - strand, within H281DRAFT_04447at 168.181 kb on - strand, within H281DRAFT_04447at 168.214 kb on + strand, within H281DRAFT_04447at 168.215 kb on - strand, within H281DRAFT_04447at 168.215 kb on - strand, within H281DRAFT_04447at 168.215 kb on - strand, within H281DRAFT_04447at 168.513 kb on - strand, within H281DRAFT_04447at 168.542 kb on - strand, within H281DRAFT_04447at 168.701 kb on + strand, within H281DRAFT_04447at 168.702 kb on - strand, within H281DRAFT_04447at 168.702 kb on - strand, within H281DRAFT_04447at 168.802 kb on + strandat 168.802 kb on + strand, within H281DRAFT_04447at 168.803 kb on - strand, within H281DRAFT_04447at 168.803 kb on - strand, within H281DRAFT_04447at 168.866 kb on + strand, within H281DRAFT_04447at 169.003 kb on - strandat 169.148 kb on - strandat 169.246 kb on + strandat 169.246 kb on + strandat 169.246 kb on + strandat 169.246 kb on + strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.247 kb on - strandat 169.273 kb on + strandat 169.282 kb on - strandat 169.479 kb on + strandat 169.566 kb on - strandat 169.635 kb on - strandat 169.986 kb on - strand, within H281DRAFT_04448at 170.048 kb on - strand, within H281DRAFT_04448at 170.048 kb on - strand, within H281DRAFT_04448

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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166,612 + H281DRAFT_04446 0.31 -0.4
166,613 - H281DRAFT_04446 0.31 +0.6
166,613 - H281DRAFT_04446 0.31 +0.3
166,660 + H281DRAFT_04446 0.36 -0.6
166,676 - H281DRAFT_04446 0.37 +0.0
166,676 - H281DRAFT_04446 0.37 +0.3
167,132 + H281DRAFT_04446 0.85 -0.3
167,339 + -0.1
167,339 + -0.1
167,339 + +2.1
167,340 - +0.8
167,340 - -0.1
167,342 + +0.3
167,342 + +0.6
167,343 - -0.0
167,343 - -0.5
167,343 - +0.4
167,348 + +0.2
167,348 + +0.6
167,349 - -0.2
167,349 - -0.0
167,542 + -0.3
167,542 + -1.2
167,681 + H281DRAFT_04447 0.12 -0.1
167,691 - H281DRAFT_04447 0.12 +0.5
167,760 + H281DRAFT_04447 0.17 +0.2
167,761 - H281DRAFT_04447 0.17 +0.5
167,761 - H281DRAFT_04447 0.17 -0.6
167,931 - H281DRAFT_04447 0.28 -0.0
168,124 - H281DRAFT_04447 0.40 -1.3
168,124 - H281DRAFT_04447 0.40 -0.3
168,181 - H281DRAFT_04447 0.44 -0.7
168,214 + H281DRAFT_04447 0.46 -0.5
168,215 - H281DRAFT_04447 0.46 +0.9
168,215 - H281DRAFT_04447 0.46 -0.4
168,215 - H281DRAFT_04447 0.46 -0.1
168,513 - H281DRAFT_04447 0.65 +0.2
168,542 - H281DRAFT_04447 0.67 +1.2
168,701 + H281DRAFT_04447 0.77 +0.5
168,702 - H281DRAFT_04447 0.77 +0.3
168,702 - H281DRAFT_04447 0.77 +0.2
168,802 + +0.3
168,802 + H281DRAFT_04447 0.83 -1.0
168,803 - H281DRAFT_04447 0.83 -0.4
168,803 - H281DRAFT_04447 0.83 +0.5
168,866 + H281DRAFT_04447 0.88 +0.2
169,003 - -0.3
169,148 - +0.7
169,246 + +0.4
169,246 + +0.0
169,246 + -1.1
169,246 + +0.7
169,247 - +0.2
169,247 - +0.0
169,247 - -0.4
169,247 - +0.2
169,247 - -0.7
169,247 - -0.2
169,247 - +0.4
169,273 + +0.5
169,282 - +0.2
169,479 + +0.3
169,566 - -0.3
169,635 - -0.4
169,986 - H281DRAFT_04448 0.43 -2.1
170,048 - H281DRAFT_04448 0.49 -0.2
170,048 - H281DRAFT_04448 0.49 -0.8

Or see this region's nucleotide sequence