Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04198

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04197 and H281DRAFT_04198 overlap by 8 nucleotidesH281DRAFT_04198 and H281DRAFT_04199 are separated by 113 nucleotides H281DRAFT_04197: H281DRAFT_04197 - hypothetical protein, at 315,928 to 317,103 _04197 H281DRAFT_04198: H281DRAFT_04198 - Protein of unknown function (DUF2946), at 317,096 to 317,668 _04198 H281DRAFT_04199: H281DRAFT_04199 - Putative Zn-dependent protease, contains TPR repeats, at 317,782 to 319,650 _04199 Position (kb) 317 318Strain fitness (log2 ratio) -2 -1 0 1at 316.140 kb on + strand, within H281DRAFT_04197at 316.200 kb on + strand, within H281DRAFT_04197at 316.354 kb on + strand, within H281DRAFT_04197at 316.354 kb on + strand, within H281DRAFT_04197at 316.403 kb on + strand, within H281DRAFT_04197at 316.687 kb on + strand, within H281DRAFT_04197at 316.688 kb on - strand, within H281DRAFT_04197at 316.688 kb on - strand, within H281DRAFT_04197at 316.690 kb on - strand, within H281DRAFT_04197at 316.690 kb on - strand, within H281DRAFT_04197at 316.792 kb on + strand, within H281DRAFT_04197at 316.792 kb on + strand, within H281DRAFT_04197at 316.793 kb on - strand, within H281DRAFT_04197at 316.849 kb on + strand, within H281DRAFT_04197at 316.850 kb on - strand, within H281DRAFT_04197at 316.850 kb on - strand, within H281DRAFT_04197at 317.188 kb on + strand, within H281DRAFT_04198at 317.273 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.325 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.327 kb on + strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strand, within H281DRAFT_04198at 317.328 kb on - strandat 317.342 kb on + strand, within H281DRAFT_04198at 317.367 kb on + strand, within H281DRAFT_04198at 317.783 kb on + strandat 317.861 kb on + strandat 317.861 kb on + strandat 317.862 kb on - strandat 317.862 kb on - strandat 317.864 kb on + strandat 317.865 kb on - strandat 318.002 kb on + strand, within H281DRAFT_04199at 318.002 kb on + strand, within H281DRAFT_04199at 318.069 kb on + strand, within H281DRAFT_04199at 318.097 kb on + strand, within H281DRAFT_04199at 318.098 kb on - strand, within H281DRAFT_04199at 318.308 kb on + strand, within H281DRAFT_04199at 318.344 kb on + strand, within H281DRAFT_04199at 318.344 kb on + strand, within H281DRAFT_04199at 318.633 kb on - strand, within H281DRAFT_04199at 318.641 kb on + strand, within H281DRAFT_04199at 318.642 kb on - strand, within H281DRAFT_04199at 318.642 kb on - strand, within H281DRAFT_04199

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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316,140 + H281DRAFT_04197 0.18 -0.4
316,200 + H281DRAFT_04197 0.23 +0.0
316,354 + H281DRAFT_04197 0.36 +1.3
316,354 + H281DRAFT_04197 0.36 +0.0
316,403 + H281DRAFT_04197 0.40 -0.0
316,687 + H281DRAFT_04197 0.65 -0.4
316,688 - H281DRAFT_04197 0.65 -0.2
316,688 - H281DRAFT_04197 0.65 -1.1
316,690 - H281DRAFT_04197 0.65 -0.1
316,690 - H281DRAFT_04197 0.65 -0.4
316,792 + H281DRAFT_04197 0.73 +0.1
316,792 + H281DRAFT_04197 0.73 -1.3
316,793 - H281DRAFT_04197 0.74 -0.2
316,849 + H281DRAFT_04197 0.78 -0.4
316,850 - H281DRAFT_04197 0.78 +0.6
316,850 - H281DRAFT_04197 0.78 -0.5
317,188 + H281DRAFT_04198 0.16 +0.1
317,273 + H281DRAFT_04198 0.31 +0.6
317,325 + H281DRAFT_04198 0.40 +0.2
317,325 + H281DRAFT_04198 0.40 -0.1
317,325 + H281DRAFT_04198 0.40 +0.6
317,325 + H281DRAFT_04198 0.40 -0.3
317,325 + H281DRAFT_04198 0.40 +0.0
317,325 + H281DRAFT_04198 0.40 -0.2
317,327 + H281DRAFT_04198 0.40 -1.9
317,327 + H281DRAFT_04198 0.40 +0.0
317,327 + H281DRAFT_04198 0.40 +0.1
317,327 + H281DRAFT_04198 0.40 +0.6
317,328 - H281DRAFT_04198 0.40 -1.5
317,328 - H281DRAFT_04198 0.40 -1.2
317,328 - H281DRAFT_04198 0.40 +0.2
317,328 - H281DRAFT_04198 0.40 -0.4
317,328 - H281DRAFT_04198 0.40 +0.5
317,328 - H281DRAFT_04198 0.40 +0.5
317,328 - H281DRAFT_04198 0.40 -0.0
317,328 - -0.8
317,342 + H281DRAFT_04198 0.43 -0.3
317,367 + H281DRAFT_04198 0.47 -0.1
317,783 + +0.3
317,861 + -0.0
317,861 + -0.2
317,862 - -0.0
317,862 - -1.0
317,864 + -1.1
317,865 - -0.4
318,002 + H281DRAFT_04199 0.12 +0.1
318,002 + H281DRAFT_04199 0.12 -0.2
318,069 + H281DRAFT_04199 0.15 -0.4
318,097 + H281DRAFT_04199 0.17 -0.9
318,098 - H281DRAFT_04199 0.17 +0.3
318,308 + H281DRAFT_04199 0.28 -1.7
318,344 + H281DRAFT_04199 0.30 -0.2
318,344 + H281DRAFT_04199 0.30 -1.0
318,633 - H281DRAFT_04199 0.46 -0.3
318,641 + H281DRAFT_04199 0.46 -0.0
318,642 - H281DRAFT_04199 0.46 +0.8
318,642 - H281DRAFT_04199 0.46 -0.2

Or see this region's nucleotide sequence