Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03910

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03909 and H281DRAFT_03910 are separated by 155 nucleotidesH281DRAFT_03910 and H281DRAFT_03911 are separated by 115 nucleotides H281DRAFT_03909: H281DRAFT_03909 - Acetoin utilization deacetylase AcuC, at 5,397 to 6,371 _03909 H281DRAFT_03910: H281DRAFT_03910 - membrane-bound lytic murein transglycosylase B, at 6,527 to 7,765 _03910 H281DRAFT_03911: H281DRAFT_03911 - cysteine synthase, at 7,881 to 8,783 _03911 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1at 5.540 kb on - strand, within H281DRAFT_03909at 5.540 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 5.715 kb on - strand, within H281DRAFT_03909at 6.036 kb on + strand, within H281DRAFT_03909at 6.053 kb on + strand, within H281DRAFT_03909at 6.121 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.150 kb on + strand, within H281DRAFT_03909at 6.151 kb on - strand, within H281DRAFT_03909at 6.304 kb on + strandat 6.304 kb on + strandat 6.305 kb on - strandat 6.305 kb on - strandat 6.305 kb on - strandat 6.305 kb on - strandat 6.411 kb on + strandat 6.412 kb on - strandat 6.412 kb on - strandat 6.412 kb on - strandat 6.429 kb on + strandat 6.430 kb on - strandat 6.526 kb on + strandat 6.527 kb on - strandat 6.527 kb on - strandat 6.778 kb on + strand, within H281DRAFT_03910at 6.792 kb on - strand, within H281DRAFT_03910at 6.840 kb on - strand, within H281DRAFT_03910at 7.094 kb on - strand, within H281DRAFT_03910at 7.124 kb on - strand, within H281DRAFT_03910at 7.169 kb on + strand, within H281DRAFT_03910at 7.169 kb on + strand, within H281DRAFT_03910at 7.169 kb on + strand, within H281DRAFT_03910at 7.170 kb on - strand, within H281DRAFT_03910at 7.170 kb on - strand, within H281DRAFT_03910at 7.223 kb on + strand, within H281DRAFT_03910at 7.224 kb on - strand, within H281DRAFT_03910at 7.286 kb on + strand, within H281DRAFT_03910at 7.287 kb on - strand, within H281DRAFT_03910at 7.352 kb on + strand, within H281DRAFT_03910at 7.353 kb on - strand, within H281DRAFT_03910at 7.353 kb on - strand, within H281DRAFT_03910at 7.589 kb on + strand, within H281DRAFT_03910at 7.589 kb on + strand, within H281DRAFT_03910at 7.589 kb on + strand, within H281DRAFT_03910at 7.589 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.591 kb on + strand, within H281DRAFT_03910at 7.592 kb on - strand, within H281DRAFT_03910at 7.592 kb on - strand, within H281DRAFT_03910at 7.614 kb on - strand, within H281DRAFT_03910at 7.646 kb on + strandat 7.647 kb on - strandat 7.763 kb on + strandat 7.763 kb on + strandat 7.763 kb on + strandat 7.764 kb on - strandat 7.771 kb on - strandat 7.771 kb on - strandat 7.801 kb on + strandat 7.803 kb on + strandat 7.803 kb on + strandat 7.804 kb on - strandat 7.804 kb on - strandat 7.804 kb on - strandat 7.804 kb on - strandat 7.804 kb on - strandat 7.804 kb on - strandat 7.809 kb on + strandat 7.874 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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5,540 - H281DRAFT_03909 0.15 -1.3
5,540 - H281DRAFT_03909 0.15 -1.3
5,715 - H281DRAFT_03909 0.33 -0.8
5,715 - H281DRAFT_03909 0.33 -2.4
5,715 - H281DRAFT_03909 0.33 -0.5
6,036 + H281DRAFT_03909 0.66 -1.3
6,053 + H281DRAFT_03909 0.67 -0.9
6,121 + H281DRAFT_03909 0.74 -1.5
6,150 + H281DRAFT_03909 0.77 -2.1
6,150 + H281DRAFT_03909 0.77 -1.1
6,150 + H281DRAFT_03909 0.77 -1.0
6,150 + H281DRAFT_03909 0.77 -1.1
6,151 - H281DRAFT_03909 0.77 -0.9
6,304 + -1.5
6,304 + -0.9
6,305 - +1.3
6,305 - -1.7
6,305 - -1.6
6,305 - -1.8
6,411 + -1.1
6,412 - +1.1
6,412 - +0.4
6,412 - +0.9
6,429 + -1.4
6,430 - +0.5
6,526 + +0.7
6,527 - +0.7
6,527 - +0.7
6,778 + H281DRAFT_03910 0.20 -0.8
6,792 - H281DRAFT_03910 0.21 +0.6
6,840 - H281DRAFT_03910 0.25 +0.4
7,094 - H281DRAFT_03910 0.46 +0.6
7,124 - H281DRAFT_03910 0.48 +1.1
7,169 + H281DRAFT_03910 0.52 -0.4
7,169 + H281DRAFT_03910 0.52 +0.8
7,169 + H281DRAFT_03910 0.52 +0.7
7,170 - H281DRAFT_03910 0.52 +0.7
7,170 - H281DRAFT_03910 0.52 +0.5
7,223 + H281DRAFT_03910 0.56 +0.6
7,224 - H281DRAFT_03910 0.56 -0.0
7,286 + H281DRAFT_03910 0.61 -0.2
7,287 - H281DRAFT_03910 0.61 +0.3
7,352 + H281DRAFT_03910 0.67 +0.2
7,353 - H281DRAFT_03910 0.67 +0.1
7,353 - H281DRAFT_03910 0.67 +0.1
7,589 + H281DRAFT_03910 0.86 +0.1
7,589 + H281DRAFT_03910 0.86 -0.0
7,589 + H281DRAFT_03910 0.86 -0.2
7,589 + H281DRAFT_03910 0.86 +0.7
7,591 + H281DRAFT_03910 0.86 +0.9
7,591 + H281DRAFT_03910 0.86 +0.5
7,591 + H281DRAFT_03910 0.86 -1.1
7,591 + H281DRAFT_03910 0.86 +0.2
7,591 + H281DRAFT_03910 0.86 -0.1
7,591 + H281DRAFT_03910 0.86 +0.1
7,592 - H281DRAFT_03910 0.86 +0.5
7,592 - H281DRAFT_03910 0.86 +0.6
7,614 - H281DRAFT_03910 0.88 -0.1
7,646 + -0.1
7,647 - +1.4
7,763 + +0.6
7,763 + -0.1
7,763 + +0.4
7,764 - +1.3
7,771 - +1.2
7,771 - -0.3
7,801 + +1.0
7,803 + +0.4
7,803 + -0.0
7,804 - -0.1
7,804 - -0.8
7,804 - +0.0
7,804 - -0.3
7,804 - +0.7
7,804 - +0.5
7,809 + +0.2
7,874 + +0.3

Or see this region's nucleotide sequence