Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02245

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02244 and H281DRAFT_02245 are separated by 156 nucleotidesH281DRAFT_02245 and H281DRAFT_02246 are separated by 343 nucleotides H281DRAFT_02244: H281DRAFT_02244 - DNA topoisomerase-3, at 388,655 to 391,324 _02244 H281DRAFT_02245: H281DRAFT_02245 - transcriptional regulator, LysR family, at 391,481 to 392,584 _02245 H281DRAFT_02246: H281DRAFT_02246 - phosphoenolpyruvate carboxykinase (GTP), at 392,928 to 394,796 _02246 Position (kb) 391 392 393Strain fitness (log2 ratio) -1 0 1at 391.309 kb on + strandat 391.388 kb on + strandat 391.449 kb on + strandat 391.482 kb on + strandat 391.804 kb on - strand, within H281DRAFT_02245at 391.857 kb on + strand, within H281DRAFT_02245at 391.858 kb on - strand, within H281DRAFT_02245at 391.972 kb on + strand, within H281DRAFT_02245at 391.977 kb on - strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.995 kb on + strand, within H281DRAFT_02245at 391.996 kb on - strand, within H281DRAFT_02245at 392.070 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.244 kb on + strand, within H281DRAFT_02245at 392.245 kb on - strand, within H281DRAFT_02245at 392.309 kb on - strand, within H281DRAFT_02245at 392.392 kb on - strand, within H281DRAFT_02245at 392.392 kb on - strand, within H281DRAFT_02245at 392.453 kb on + strand, within H281DRAFT_02245at 392.503 kb on + strandat 392.503 kb on + strandat 392.584 kb on + strandat 392.584 kb on + strandat 392.585 kb on - strandat 392.585 kb on - strandat 392.604 kb on + strandat 392.604 kb on + strandat 392.645 kb on + strandat 392.645 kb on + strandat 392.646 kb on - strandat 392.646 kb on - strandat 392.657 kb on + strandat 392.657 kb on + strandat 392.731 kb on + strandat 392.731 kb on + strandat 392.813 kb on + strandat 392.813 kb on + strandat 392.814 kb on - strandat 393.115 kb on + strand, within H281DRAFT_02246at 393.328 kb on + strand, within H281DRAFT_02246at 393.329 kb on - strand, within H281DRAFT_02246at 393.442 kb on + strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.443 kb on - strand, within H281DRAFT_02246at 393.561 kb on - strand, within H281DRAFT_02246

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
391,309 + +0.1
391,388 + -0.1
391,449 + +0.2
391,482 + -0.4
391,804 - H281DRAFT_02245 0.29 -0.6
391,857 + H281DRAFT_02245 0.34 -0.7
391,858 - H281DRAFT_02245 0.34 -1.0
391,972 + H281DRAFT_02245 0.44 -0.6
391,977 - H281DRAFT_02245 0.45 -1.4
391,995 + H281DRAFT_02245 0.47 -0.7
391,995 + H281DRAFT_02245 0.47 -0.8
391,995 + H281DRAFT_02245 0.47 -1.6
391,995 + H281DRAFT_02245 0.47 -0.1
391,996 - H281DRAFT_02245 0.47 -0.6
392,070 + H281DRAFT_02245 0.53 +0.4
392,244 + H281DRAFT_02245 0.69 +0.2
392,244 + H281DRAFT_02245 0.69 -0.3
392,245 - H281DRAFT_02245 0.69 -0.0
392,309 - H281DRAFT_02245 0.75 -0.6
392,392 - H281DRAFT_02245 0.83 -0.0
392,392 - H281DRAFT_02245 0.83 -0.4
392,453 + H281DRAFT_02245 0.88 +0.3
392,503 + -0.8
392,503 + +0.4
392,584 + -0.3
392,584 + +0.1
392,585 - -0.9
392,585 - -0.3
392,604 + -0.2
392,604 + -0.1
392,645 + -0.1
392,645 + -0.4
392,646 - +0.0
392,646 - +1.4
392,657 + -0.7
392,657 + -1.3
392,731 + -0.1
392,731 + +0.4
392,813 + -0.3
392,813 + +0.5
392,814 - -0.8
393,115 + H281DRAFT_02246 0.10 +0.5
393,328 + H281DRAFT_02246 0.21 +0.9
393,329 - H281DRAFT_02246 0.21 -0.3
393,442 + H281DRAFT_02246 0.28 +1.1
393,443 - H281DRAFT_02246 0.28 +0.3
393,443 - H281DRAFT_02246 0.28 +0.4
393,443 - H281DRAFT_02246 0.28 +0.5
393,561 - H281DRAFT_02246 0.34 +0.7

Or see this region's nucleotide sequence