Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00954

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00953 and H281DRAFT_00954 are separated by 147 nucleotidesH281DRAFT_00954 and H281DRAFT_00955 are separated by 38 nucleotidesH281DRAFT_00955 and H281DRAFT_00956 overlap by 4 nucleotides H281DRAFT_00953: H281DRAFT_00953 - Glycosyltransferase involved in cell wall bisynthesis, at 1,061,807 to 1,062,973 _00953 H281DRAFT_00954: H281DRAFT_00954 - GDPmannose 4,6-dehydratase, at 1,063,121 to 1,064,164 _00954 H281DRAFT_00955: H281DRAFT_00955 - Lysophospholipase L1, at 1,064,203 to 1,064,958 _00955 H281DRAFT_00956: H281DRAFT_00956 - Peptidoglycan/LPS O-acetylase OafA/YrhL, contains acyltransferase and SGNH-hydrolase domains, at 1,064,955 to 1,066,052 _00956 Position (kb) 1063 1064 1065Strain fitness (log2 ratio) -1 0 1at 1062.239 kb on + strand, within H281DRAFT_00953at 1062.242 kb on - strand, within H281DRAFT_00953at 1062.840 kb on + strand, within H281DRAFT_00953at 1062.841 kb on - strand, within H281DRAFT_00953at 1062.885 kb on - strandat 1063.123 kb on - strandat 1063.917 kb on + strand, within H281DRAFT_00954at 1063.917 kb on + strand, within H281DRAFT_00954at 1063.917 kb on + strand, within H281DRAFT_00954at 1063.918 kb on - strand, within H281DRAFT_00954at 1064.061 kb on + strandat 1064.062 kb on - strandat 1064.164 kb on + strandat 1064.343 kb on - strand, within H281DRAFT_00955at 1064.561 kb on + strand, within H281DRAFT_00955at 1064.744 kb on + strand, within H281DRAFT_00955at 1064.745 kb on - strand, within H281DRAFT_00955at 1064.796 kb on + strand, within H281DRAFT_00955at 1064.819 kb on + strand, within H281DRAFT_00955at 1064.820 kb on - strand, within H281DRAFT_00955at 1065.085 kb on + strand, within H281DRAFT_00956

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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1,062,239 + H281DRAFT_00953 0.37 +0.2
1,062,242 - H281DRAFT_00953 0.37 -0.0
1,062,840 + H281DRAFT_00953 0.89 +0.7
1,062,841 - H281DRAFT_00953 0.89 +0.4
1,062,885 - +0.7
1,063,123 - -0.1
1,063,917 + H281DRAFT_00954 0.76 +0.1
1,063,917 + H281DRAFT_00954 0.76 +0.3
1,063,917 + H281DRAFT_00954 0.76 +0.6
1,063,918 - H281DRAFT_00954 0.76 +0.9
1,064,061 + -0.1
1,064,062 - -0.4
1,064,164 + +0.5
1,064,343 - H281DRAFT_00955 0.19 -0.8
1,064,561 + H281DRAFT_00955 0.47 -0.4
1,064,744 + H281DRAFT_00955 0.72 -1.7
1,064,745 - H281DRAFT_00955 0.72 +0.2
1,064,796 + H281DRAFT_00955 0.78 -0.7
1,064,819 + H281DRAFT_00955 0.81 +0.6
1,064,820 - H281DRAFT_00955 0.82 +0.1
1,065,085 + H281DRAFT_00956 0.12 +0.3

Or see this region's nucleotide sequence