Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00366

Experiment: propionate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00365 and H281DRAFT_00366 are separated by 240 nucleotidesH281DRAFT_00366 and H281DRAFT_00367 are separated by 78 nucleotidesH281DRAFT_00367 and H281DRAFT_00368 are separated by 179 nucleotides H281DRAFT_00365: H281DRAFT_00365 - methyl-accepting chemotaxis sensory transducer with Cache sensor, at 398,835 to 400,634 _00365 H281DRAFT_00366: H281DRAFT_00366 - phospholipase C, at 400,875 to 402,986 _00366 H281DRAFT_00367: H281DRAFT_00367 - hypothetical protein, at 403,065 to 403,388 _00367 H281DRAFT_00368: H281DRAFT_00368 - Pimeloyl-ACP methyl ester carboxylesterase, at 403,568 to 404,422 _00368 Position (kb) 400 401 402 403Strain fitness (log2 ratio) -1 0 1at 400.268 kb on - strand, within H281DRAFT_00365at 401.938 kb on + strand, within H281DRAFT_00366at 402.436 kb on + strand, within H281DRAFT_00366at 402.437 kb on - strandat 402.618 kb on - strand, within H281DRAFT_00366at 403.827 kb on + strand, within H281DRAFT_00368at 403.925 kb on + strand, within H281DRAFT_00368at 403.940 kb on + strand, within H281DRAFT_00368

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Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
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400,268 - H281DRAFT_00365 0.80 +0.3
401,938 + H281DRAFT_00366 0.50 +1.0
402,436 + H281DRAFT_00366 0.74 +0.1
402,437 - -0.7
402,618 - H281DRAFT_00366 0.83 +1.5
403,827 + H281DRAFT_00368 0.30 -1.0
403,925 + H281DRAFT_00368 0.42 +0.7
403,940 + H281DRAFT_00368 0.44 -0.6

Or see this region's nucleotide sequence