Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00197

Experiment: propionate (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_00195 and H281DRAFT_00196 are separated by 173 nucleotidesH281DRAFT_00196 and H281DRAFT_00197 are separated by 54 nucleotidesH281DRAFT_00197 and H281DRAFT_00198 are separated by 422 nucleotides H281DRAFT_00195: H281DRAFT_00195 - transcriptional regulator, XRE family, at 209,575 to 210,399 _00195 H281DRAFT_00196: H281DRAFT_00196 - Ubiquinone/menaquinone biosynthesis C-methylase UbiE, at 210,573 to 211,325 _00196 H281DRAFT_00197: H281DRAFT_00197 - Phosphoenolpyruvate carboxylase, type 1, at 211,380 to 214,589 _00197 H281DRAFT_00198: H281DRAFT_00198 - hydroxymethylbilane synthase, at 215,012 to 216,049 _00198 Position (kb) 211 212 213 214 215Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 210.429 kb on + strandat 210.429 kb on + strandat 210.430 kb on - strandat 210.442 kb on - strandat 210.477 kb on - strandat 210.568 kb on + strandat 210.625 kb on - strandat 210.778 kb on - strand, within H281DRAFT_00196at 210.874 kb on + strand, within H281DRAFT_00196at 211.040 kb on + strand, within H281DRAFT_00196at 211.040 kb on + strand, within H281DRAFT_00196at 211.041 kb on - strand, within H281DRAFT_00196at 211.077 kb on - strand, within H281DRAFT_00196at 211.274 kb on - strandat 211.274 kb on - strandat 211.499 kb on + strandat 211.499 kb on + strandat 211.500 kb on - strandat 211.604 kb on + strandat 211.849 kb on + strand, within H281DRAFT_00197at 211.850 kb on - strand, within H281DRAFT_00197at 212.054 kb on - strand, within H281DRAFT_00197at 212.287 kb on + strand, within H281DRAFT_00197at 212.288 kb on - strand, within H281DRAFT_00197at 212.392 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.695 kb on + strand, within H281DRAFT_00197at 212.792 kb on - strand, within H281DRAFT_00197at 212.869 kb on + strand, within H281DRAFT_00197at 213.187 kb on + strand, within H281DRAFT_00197at 213.188 kb on - strand, within H281DRAFT_00197at 213.340 kb on + strand, within H281DRAFT_00197at 213.544 kb on + strand, within H281DRAFT_00197at 213.544 kb on + strand, within H281DRAFT_00197at 213.651 kb on - strand, within H281DRAFT_00197at 213.851 kb on - strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.952 kb on + strand, within H281DRAFT_00197at 213.953 kb on - strand, within H281DRAFT_00197at 214.144 kb on + strand, within H281DRAFT_00197at 214.144 kb on + strand, within H281DRAFT_00197at 214.621 kb on + strandat 214.637 kb on - strandat 214.690 kb on + strandat 214.691 kb on - strandat 214.691 kb on - strandat 214.981 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction propionate (C)
remove
210,429 + -0.1
210,429 + +2.6
210,430 - +0.4
210,442 - -0.0
210,477 - +0.4
210,568 + +0.6
210,625 - +1.5
210,778 - H281DRAFT_00196 0.27 -0.3
210,874 + H281DRAFT_00196 0.40 +0.4
211,040 + H281DRAFT_00196 0.62 +0.3
211,040 + H281DRAFT_00196 0.62 -0.3
211,041 - H281DRAFT_00196 0.62 +0.4
211,077 - H281DRAFT_00196 0.67 +0.5
211,274 - -0.2
211,274 - +0.7
211,499 + -3.8
211,499 + -1.9
211,500 - -1.6
211,604 + -3.7
211,849 + H281DRAFT_00197 0.15 -5.2
211,850 - H281DRAFT_00197 0.15 -1.5
212,054 - H281DRAFT_00197 0.21 -2.5
212,287 + H281DRAFT_00197 0.28 -4.2
212,288 - H281DRAFT_00197 0.28 -3.3
212,392 + H281DRAFT_00197 0.32 -4.8
212,695 + H281DRAFT_00197 0.41 -2.4
212,695 + H281DRAFT_00197 0.41 -4.6
212,695 + H281DRAFT_00197 0.41 -2.0
212,695 + H281DRAFT_00197 0.41 -4.3
212,792 - H281DRAFT_00197 0.44 -3.6
212,869 + H281DRAFT_00197 0.46 -3.1
213,187 + H281DRAFT_00197 0.56 -1.6
213,188 - H281DRAFT_00197 0.56 -2.3
213,340 + H281DRAFT_00197 0.61 -3.8
213,544 + H281DRAFT_00197 0.67 -5.0
213,544 + H281DRAFT_00197 0.67 -2.6
213,651 - H281DRAFT_00197 0.71 -3.6
213,851 - H281DRAFT_00197 0.77 -4.9
213,952 + H281DRAFT_00197 0.80 -4.9
213,952 + H281DRAFT_00197 0.80 -3.0
213,952 + H281DRAFT_00197 0.80 -3.8
213,952 + H281DRAFT_00197 0.80 -4.1
213,952 + H281DRAFT_00197 0.80 -3.9
213,953 - H281DRAFT_00197 0.80 -4.6
214,144 + H281DRAFT_00197 0.86 -2.8
214,144 + H281DRAFT_00197 0.86 -3.7
214,621 + -1.9
214,637 - -0.6
214,690 + -1.1
214,691 - +1.1
214,691 - +0.8
214,981 + -4.5

Or see this region's nucleotide sequence