Experiment: propionate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_00054 and H281DRAFT_00055 are separated by 181 nucleotides H281DRAFT_00055 and H281DRAFT_00056 are separated by 84 nucleotides
H281DRAFT_00054: H281DRAFT_00054 - Predicted transcriptional regulators, at 56,439 to 57,248
_00054
H281DRAFT_00055: H281DRAFT_00055 - amidase, at 57,430 to 58,884
_00055
H281DRAFT_00056: H281DRAFT_00056 - transcriptional regulator, LysR family, at 58,969 to 59,913
_00056
Position (kb) 57
58
59 Strain fitness (log2 ratio) -2
-1
0
1 at 56.608 kb on - strand, within H281DRAFT_00054 at 56.656 kb on + strand, within H281DRAFT_00054 at 56.660 kb on + strand, within H281DRAFT_00054 at 56.782 kb on + strand, within H281DRAFT_00054 at 56.806 kb on - strand, within H281DRAFT_00054 at 56.901 kb on - strand, within H281DRAFT_00054 at 56.901 kb on - strand, within H281DRAFT_00054 at 56.901 kb on - strand, within H281DRAFT_00054 at 56.915 kb on - strand, within H281DRAFT_00054 at 56.922 kb on + strand, within H281DRAFT_00054 at 57.095 kb on - strand, within H281DRAFT_00054 at 57.159 kb on + strand, within H281DRAFT_00054 at 57.159 kb on + strand, within H281DRAFT_00054 at 57.159 kb on + strand, within H281DRAFT_00054 at 57.159 kb on + strand, within H281DRAFT_00054 at 57.160 kb on - strand, within H281DRAFT_00054 at 57.160 kb on - strand, within H281DRAFT_00054 at 57.208 kb on - strand at 57.208 kb on - strand at 57.208 kb on - strand at 57.381 kb on - strand at 57.787 kb on - strand, within H281DRAFT_00055 at 58.018 kb on - strand, within H281DRAFT_00055 at 58.280 kb on - strand, within H281DRAFT_00055 at 58.280 kb on - strand, within H281DRAFT_00055 at 58.346 kb on + strand, within H281DRAFT_00055 at 58.860 kb on - strand at 58.860 kb on - strand at 58.990 kb on + strand at 58.990 kb on + strand at 58.991 kb on - strand at 58.993 kb on - strand at 59.510 kb on - strand, within H281DRAFT_00056
Per-strain Table
Position Strand Gene LocusTag Fraction propionate (C) remove 56,608 - H281DRAFT_00054 0.21 -0.1 56,656 + H281DRAFT_00054 0.27 +0.2 56,660 + H281DRAFT_00054 0.27 -0.2 56,782 + H281DRAFT_00054 0.42 -0.2 56,806 - H281DRAFT_00054 0.45 +0.3 56,901 - H281DRAFT_00054 0.57 -1.1 56,901 - H281DRAFT_00054 0.57 -0.6 56,901 - H281DRAFT_00054 0.57 +0.2 56,915 - H281DRAFT_00054 0.59 -0.4 56,922 + H281DRAFT_00054 0.60 -0.2 57,095 - H281DRAFT_00054 0.81 -0.5 57,159 + H281DRAFT_00054 0.89 +0.6 57,159 + H281DRAFT_00054 0.89 -0.3 57,159 + H281DRAFT_00054 0.89 +0.4 57,159 + H281DRAFT_00054 0.89 -0.3 57,160 - H281DRAFT_00054 0.89 -0.2 57,160 - H281DRAFT_00054 0.89 -0.2 57,208 - +0.2 57,208 - -2.1 57,208 - -0.6 57,381 - +0.7 57,787 - H281DRAFT_00055 0.25 +0.8 58,018 - H281DRAFT_00055 0.40 +0.5 58,280 - H281DRAFT_00055 0.58 +1.0 58,280 - H281DRAFT_00055 0.58 -0.2 58,346 + H281DRAFT_00055 0.63 +0.9 58,860 - +0.8 58,860 - -0.2 58,990 + +0.4 58,990 + +0.3 58,991 - -0.1 58,993 - +0.7 59,510 - H281DRAFT_00056 0.57 -0.1
Or see this region's nucleotide sequence