Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c05390

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c05380 and PGA1_c05390 are separated by 161 nucleotidesPGA1_c05390 and PGA1_c05400 are separated by 19 nucleotides PGA1_c05380: PGA1_c05380 - hypothetical protein, at 545,206 to 546,669 _c05380 PGA1_c05390: PGA1_c05390 - glycosyl transferase, at 546,831 to 547,583 _c05390 PGA1_c05400: PGA1_c05400 - putative glycosyl transferase, family 2, at 547,603 to 548,586 _c05400 Position (kb) 546 547 548Strain fitness (log2 ratio) -2 -1 0 1 2at 545.876 kb on - strand, within PGA1_c05380at 545.889 kb on + strand, within PGA1_c05380at 545.896 kb on - strand, within PGA1_c05380at 545.898 kb on - strand, within PGA1_c05380at 545.931 kb on - strand, within PGA1_c05380at 545.964 kb on + strand, within PGA1_c05380at 545.998 kb on - strand, within PGA1_c05380at 546.025 kb on + strand, within PGA1_c05380at 546.025 kb on + strand, within PGA1_c05380at 546.030 kb on + strand, within PGA1_c05380at 546.033 kb on - strand, within PGA1_c05380at 546.085 kb on + strand, within PGA1_c05380at 546.085 kb on + strand, within PGA1_c05380at 546.098 kb on + strand, within PGA1_c05380at 546.106 kb on - strand, within PGA1_c05380at 546.138 kb on + strand, within PGA1_c05380at 546.148 kb on + strand, within PGA1_c05380at 546.148 kb on + strand, within PGA1_c05380at 546.148 kb on + strand, within PGA1_c05380at 546.171 kb on - strand, within PGA1_c05380at 546.205 kb on - strand, within PGA1_c05380at 546.206 kb on + strand, within PGA1_c05380at 546.235 kb on + strand, within PGA1_c05380at 546.273 kb on - strand, within PGA1_c05380at 546.348 kb on - strand, within PGA1_c05380at 546.356 kb on + strand, within PGA1_c05380at 546.364 kb on - strand, within PGA1_c05380at 546.364 kb on - strand, within PGA1_c05380at 546.364 kb on - strand, within PGA1_c05380at 546.414 kb on + strand, within PGA1_c05380at 546.464 kb on - strand, within PGA1_c05380at 546.493 kb on - strand, within PGA1_c05380at 546.534 kb on + strandat 546.534 kb on + strandat 546.534 kb on + strandat 546.542 kb on - strandat 546.542 kb on - strandat 546.542 kb on - strandat 546.542 kb on - strandat 546.555 kb on + strandat 546.574 kb on + strandat 546.582 kb on - strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.612 kb on + strandat 546.620 kb on - strandat 546.620 kb on - strandat 546.642 kb on + strandat 546.642 kb on + strandat 546.649 kb on - strandat 546.650 kb on - strandat 546.652 kb on + strandat 546.686 kb on - strandat 546.795 kb on + strandat 546.838 kb on - strandat 546.861 kb on + strandat 546.861 kb on + strandat 546.957 kb on - strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 546.995 kb on + strand, within PGA1_c05390at 547.003 kb on - strand, within PGA1_c05390at 547.056 kb on - strand, within PGA1_c05390at 547.136 kb on + strand, within PGA1_c05390at 547.210 kb on + strand, within PGA1_c05390at 547.219 kb on - strand, within PGA1_c05390at 547.312 kb on + strand, within PGA1_c05390at 547.407 kb on + strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.415 kb on - strand, within PGA1_c05390at 547.512 kb on - strandat 547.520 kb on - strandat 547.536 kb on - strandat 547.569 kb on - strandat 547.580 kb on - strandat 547.585 kb on - strandat 547.675 kb on - strandat 547.695 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.700 kb on - strandat 547.826 kb on + strand, within PGA1_c05400at 547.826 kb on + strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.834 kb on - strand, within PGA1_c05400at 547.856 kb on + strand, within PGA1_c05400at 547.882 kb on + strand, within PGA1_c05400at 547.914 kb on - strand, within PGA1_c05400at 547.925 kb on - strand, within PGA1_c05400at 548.039 kb on - strand, within PGA1_c05400at 548.077 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.079 kb on + strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.085 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.087 kb on - strand, within PGA1_c05400at 548.106 kb on - strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.119 kb on + strand, within PGA1_c05400at 548.234 kb on + strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.242 kb on - strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.329 kb on + strand, within PGA1_c05400at 548.332 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.337 kb on - strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.357 kb on + strand, within PGA1_c05400at 548.365 kb on - strand, within PGA1_c05400at 548.380 kb on - strand, within PGA1_c05400at 548.464 kb on + strand, within PGA1_c05400at 548.515 kb on - strandat 548.547 kb on - strandat 548.567 kb on + strandat 548.567 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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545,876 - PGA1_c05380 0.46 +0.6
545,889 + PGA1_c05380 0.47 -1.2
545,896 - PGA1_c05380 0.47 -2.3
545,898 - PGA1_c05380 0.47 +0.7
545,931 - PGA1_c05380 0.50 +0.9
545,964 + PGA1_c05380 0.52 -2.0
545,998 - PGA1_c05380 0.54 +1.0
546,025 + PGA1_c05380 0.56 -1.0
546,025 + PGA1_c05380 0.56 -1.1
546,030 + PGA1_c05380 0.56 +0.0
546,033 - PGA1_c05380 0.56 -0.8
546,085 + PGA1_c05380 0.60 -1.9
546,085 + PGA1_c05380 0.60 +1.4
546,098 + PGA1_c05380 0.61 +1.5
546,106 - PGA1_c05380 0.61 +0.6
546,138 + PGA1_c05380 0.64 -1.0
546,148 + PGA1_c05380 0.64 +0.4
546,148 + PGA1_c05380 0.64 -0.6
546,148 + PGA1_c05380 0.64 -2.3
546,171 - PGA1_c05380 0.66 +0.5
546,205 - PGA1_c05380 0.68 +0.7
546,206 + PGA1_c05380 0.68 +1.0
546,235 + PGA1_c05380 0.70 +1.4
546,273 - PGA1_c05380 0.73 +0.9
546,348 - PGA1_c05380 0.78 +1.3
546,356 + PGA1_c05380 0.79 -0.7
546,364 - PGA1_c05380 0.79 -0.5
546,364 - PGA1_c05380 0.79 -1.3
546,364 - PGA1_c05380 0.79 +0.1
546,414 + PGA1_c05380 0.83 +1.5
546,464 - PGA1_c05380 0.86 -2.0
546,493 - PGA1_c05380 0.88 +0.1
546,534 + +0.0
546,534 + +1.8
546,534 + +0.4
546,542 - -2.3
546,542 - -1.0
546,542 - -0.5
546,542 - -0.3
546,555 + +0.0
546,574 + +0.2
546,582 - -0.6
546,612 + -1.3
546,612 + -1.9
546,612 + -1.1
546,612 + -0.5
546,620 - +0.6
546,620 - +1.3
546,642 + -1.6
546,642 + -1.2
546,649 - +0.3
546,650 - -0.6
546,652 + +1.6
546,686 - +0.4
546,795 + +0.3
546,838 - +1.0
546,861 + +0.2
546,861 + +0.2
546,957 - PGA1_c05390 0.17 +1.0
546,995 + PGA1_c05390 0.22 +0.0
546,995 + PGA1_c05390 0.22 -0.2
546,995 + PGA1_c05390 0.22 -0.2
547,003 - PGA1_c05390 0.23 +0.3
547,056 - PGA1_c05390 0.30 -0.7
547,136 + PGA1_c05390 0.41 -1.5
547,210 + PGA1_c05390 0.50 +0.5
547,219 - PGA1_c05390 0.52 +2.0
547,312 + PGA1_c05390 0.64 +0.1
547,407 + PGA1_c05390 0.76 +1.9
547,415 - PGA1_c05390 0.78 +0.6
547,415 - PGA1_c05390 0.78 +0.0
547,415 - PGA1_c05390 0.78 -1.5
547,512 - +0.3
547,520 - -0.4
547,536 - +0.6
547,569 - +2.0
547,580 - +1.0
547,585 - +0.8
547,675 - -1.8
547,695 - -1.2
547,700 - +0.3
547,700 - +0.4
547,700 - +1.9
547,826 + PGA1_c05400 0.23 -0.2
547,826 + PGA1_c05400 0.23 -0.1
547,834 - PGA1_c05400 0.23 +1.2
547,834 - PGA1_c05400 0.23 +0.1
547,856 + PGA1_c05400 0.26 -0.4
547,882 + PGA1_c05400 0.28 +0.0
547,914 - PGA1_c05400 0.32 +0.5
547,925 - PGA1_c05400 0.33 +1.2
548,039 - PGA1_c05400 0.44 -2.2
548,077 + PGA1_c05400 0.48 -1.0
548,079 + PGA1_c05400 0.48 +1.0
548,079 + PGA1_c05400 0.48 +0.8
548,085 - PGA1_c05400 0.49 +0.8
548,085 - PGA1_c05400 0.49 +0.2
548,087 - PGA1_c05400 0.49 +0.6
548,087 - PGA1_c05400 0.49 -0.7
548,106 - PGA1_c05400 0.51 +0.5
548,119 + PGA1_c05400 0.52 +2.0
548,119 + PGA1_c05400 0.52 +0.8
548,234 + PGA1_c05400 0.64 -1.6
548,242 - PGA1_c05400 0.65 +0.5
548,242 - PGA1_c05400 0.65 +0.0
548,242 - PGA1_c05400 0.65 -0.3
548,242 - PGA1_c05400 0.65 +1.0
548,242 - PGA1_c05400 0.65 -0.3
548,329 + PGA1_c05400 0.74 +0.5
548,329 + PGA1_c05400 0.74 -0.6
548,332 - PGA1_c05400 0.74 +0.1
548,337 - PGA1_c05400 0.75 +0.0
548,337 - PGA1_c05400 0.75 -0.5
548,357 + PGA1_c05400 0.77 +0.4
548,357 + PGA1_c05400 0.77 -0.1
548,365 - PGA1_c05400 0.77 +0.4
548,380 - PGA1_c05400 0.79 +0.7
548,464 + PGA1_c05400 0.88 +0.0
548,515 - +1.3
548,547 - +0.6
548,567 + -0.0
548,567 + +0.9

Or see this region's nucleotide sequence