Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c04080

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c04060 and PGA1_c04070 overlap by 1 nucleotidesPGA1_c04070 and PGA1_c04080 are separated by 73 nucleotidesPGA1_c04080 and PGA1_c04090 are separated by 23 nucleotides PGA1_c04060: PGA1_c04060 - phenylacetic acid degradation protein PaaC, at 391,449 to 392,222 _c04060 PGA1_c04070: PGA1_c04070 - phenylacetic acid degradation protein PaaB, at 392,222 to 392,506 _c04070 PGA1_c04080: PGA1_c04080 - phenylacetic acid degradation protein PaaA, at 392,580 to 393,557 _c04080 PGA1_c04090: PGA1_c04090 - beta-ketoadipyl-CoA thiolase PaaJ, at 393,581 to 394,783 _c04090 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1 2at 391.580 kb on - strand, within PGA1_c04060at 391.592 kb on + strand, within PGA1_c04060at 391.642 kb on + strand, within PGA1_c04060at 391.692 kb on + strand, within PGA1_c04060at 391.719 kb on + strand, within PGA1_c04060at 391.767 kb on - strand, within PGA1_c04060at 391.808 kb on - strand, within PGA1_c04060at 391.858 kb on - strand, within PGA1_c04060at 391.866 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.028 kb on - strand, within PGA1_c04060at 392.073 kb on - strand, within PGA1_c04060at 392.073 kb on - strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.080 kb on + strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.088 kb on - strand, within PGA1_c04060at 392.121 kb on + strand, within PGA1_c04060at 392.151 kb on + strandat 392.178 kb on - strandat 392.217 kb on + strandat 392.217 kb on + strandat 392.268 kb on + strand, within PGA1_c04070at 392.275 kb on + strand, within PGA1_c04070at 392.276 kb on - strand, within PGA1_c04070at 392.282 kb on - strand, within PGA1_c04070at 392.283 kb on - strand, within PGA1_c04070at 392.329 kb on - strand, within PGA1_c04070at 392.378 kb on + strand, within PGA1_c04070at 392.386 kb on + strand, within PGA1_c04070at 392.433 kb on + strand, within PGA1_c04070at 392.439 kb on + strand, within PGA1_c04070at 392.441 kb on - strand, within PGA1_c04070at 392.457 kb on - strand, within PGA1_c04070at 392.457 kb on - strand, within PGA1_c04070at 392.522 kb on + strandat 392.530 kb on - strandat 392.537 kb on + strandat 392.577 kb on + strandat 392.577 kb on + strandat 392.580 kb on - strandat 392.656 kb on + strandat 392.663 kb on - strandat 392.664 kb on - strandat 392.675 kb on + strandat 392.677 kb on + strandat 392.685 kb on - strand, within PGA1_c04080at 392.701 kb on + strand, within PGA1_c04080at 392.715 kb on - strand, within PGA1_c04080at 392.804 kb on + strand, within PGA1_c04080at 392.810 kb on + strand, within PGA1_c04080at 392.852 kb on - strand, within PGA1_c04080at 392.874 kb on - strand, within PGA1_c04080at 392.902 kb on + strand, within PGA1_c04080at 392.924 kb on - strand, within PGA1_c04080at 393.008 kb on - strand, within PGA1_c04080at 393.025 kb on + strand, within PGA1_c04080at 393.096 kb on - strand, within PGA1_c04080at 393.136 kb on + strand, within PGA1_c04080at 393.169 kb on + strand, within PGA1_c04080at 393.262 kb on - strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.271 kb on + strand, within PGA1_c04080at 393.279 kb on - strand, within PGA1_c04080at 393.281 kb on + strand, within PGA1_c04080at 393.282 kb on + strand, within PGA1_c04080at 393.289 kb on - strand, within PGA1_c04080at 393.298 kb on + strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.306 kb on - strand, within PGA1_c04080at 393.366 kb on + strand, within PGA1_c04080at 393.375 kb on - strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.420 kb on + strand, within PGA1_c04080at 393.468 kb on + strandat 393.476 kb on - strandat 393.509 kb on + strandat 393.519 kb on + strandat 393.527 kb on - strandat 393.569 kb on + strandat 393.577 kb on - strandat 393.588 kb on + strandat 393.596 kb on + strandat 393.719 kb on + strand, within PGA1_c04090at 393.724 kb on + strand, within PGA1_c04090at 393.759 kb on - strand, within PGA1_c04090at 393.856 kb on - strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.863 kb on + strand, within PGA1_c04090at 393.871 kb on - strand, within PGA1_c04090at 393.871 kb on - strand, within PGA1_c04090at 393.913 kb on + strand, within PGA1_c04090at 393.921 kb on - strand, within PGA1_c04090at 393.956 kb on + strand, within PGA1_c04090at 394.011 kb on - strand, within PGA1_c04090at 394.076 kb on - strand, within PGA1_c04090at 394.133 kb on - strand, within PGA1_c04090at 394.143 kb on + strand, within PGA1_c04090at 394.143 kb on + strand, within PGA1_c04090at 394.151 kb on - strand, within PGA1_c04090at 394.153 kb on + strand, within PGA1_c04090at 394.193 kb on + strand, within PGA1_c04090at 394.230 kb on - strand, within PGA1_c04090at 394.262 kb on + strand, within PGA1_c04090at 394.280 kb on + strand, within PGA1_c04090at 394.280 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.361 kb on + strand, within PGA1_c04090at 394.369 kb on - strand, within PGA1_c04090at 394.382 kb on + strand, within PGA1_c04090at 394.396 kb on - strand, within PGA1_c04090at 394.417 kb on - strand, within PGA1_c04090at 394.424 kb on + strand, within PGA1_c04090at 394.465 kb on + strand, within PGA1_c04090at 394.548 kb on + strand, within PGA1_c04090

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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391,580 - PGA1_c04060 0.17 +0.0
391,592 + PGA1_c04060 0.18 +0.7
391,642 + PGA1_c04060 0.25 +1.5
391,692 + PGA1_c04060 0.31 +0.6
391,719 + PGA1_c04060 0.35 +0.6
391,767 - PGA1_c04060 0.41 +0.3
391,808 - PGA1_c04060 0.46 +0.0
391,858 - PGA1_c04060 0.53 -0.1
391,866 - PGA1_c04060 0.54 +1.0
392,028 - PGA1_c04060 0.75 -0.3
392,028 - PGA1_c04060 0.75 +0.8
392,028 - PGA1_c04060 0.75 +2.5
392,073 - PGA1_c04060 0.81 +1.7
392,073 - PGA1_c04060 0.81 +1.0
392,080 + PGA1_c04060 0.82 +2.0
392,080 + PGA1_c04060 0.82 +0.6
392,080 + PGA1_c04060 0.82 -0.3
392,080 + PGA1_c04060 0.82 +0.6
392,080 + PGA1_c04060 0.82 +2.0
392,080 + PGA1_c04060 0.82 +0.8
392,088 - PGA1_c04060 0.83 +0.9
392,088 - PGA1_c04060 0.83 +0.9
392,088 - PGA1_c04060 0.83 +0.5
392,088 - PGA1_c04060 0.83 +0.1
392,088 - PGA1_c04060 0.83 +0.4
392,121 + PGA1_c04060 0.87 +0.3
392,151 + +0.9
392,178 - +2.5
392,217 + +0.8
392,217 + +0.7
392,268 + PGA1_c04070 0.16 +0.7
392,275 + PGA1_c04070 0.19 +0.8
392,276 - PGA1_c04070 0.19 +0.7
392,282 - PGA1_c04070 0.21 -2.0
392,283 - PGA1_c04070 0.21 +0.8
392,329 - PGA1_c04070 0.38 +0.3
392,378 + PGA1_c04070 0.55 +0.1
392,386 + PGA1_c04070 0.58 +0.4
392,433 + PGA1_c04070 0.74 +0.1
392,439 + PGA1_c04070 0.76 +1.0
392,441 - PGA1_c04070 0.77 -0.3
392,457 - PGA1_c04070 0.82 +1.2
392,457 - PGA1_c04070 0.82 +0.8
392,522 + -0.6
392,530 - -0.3
392,537 + +1.0
392,577 + +0.4
392,577 + +0.2
392,580 - -0.8
392,656 + +1.2
392,663 - +0.5
392,664 - +1.0
392,675 + +0.4
392,677 + +2.6
392,685 - PGA1_c04080 0.11 -0.8
392,701 + PGA1_c04080 0.12 +0.2
392,715 - PGA1_c04080 0.14 +0.7
392,804 + PGA1_c04080 0.23 +0.6
392,810 + PGA1_c04080 0.24 +0.8
392,852 - PGA1_c04080 0.28 +1.1
392,874 - PGA1_c04080 0.30 +0.8
392,902 + PGA1_c04080 0.33 +0.8
392,924 - PGA1_c04080 0.35 -1.3
393,008 - PGA1_c04080 0.44 +1.2
393,025 + PGA1_c04080 0.46 +0.6
393,096 - PGA1_c04080 0.53 +0.7
393,136 + PGA1_c04080 0.57 +0.6
393,169 + PGA1_c04080 0.60 -0.2
393,262 - PGA1_c04080 0.70 +0.9
393,271 + PGA1_c04080 0.71 +0.4
393,271 + PGA1_c04080 0.71 +0.4
393,271 + PGA1_c04080 0.71 +0.6
393,271 + PGA1_c04080 0.71 +0.5
393,279 - PGA1_c04080 0.71 -0.1
393,281 + PGA1_c04080 0.72 +1.3
393,282 + PGA1_c04080 0.72 +1.6
393,289 - PGA1_c04080 0.72 +0.8
393,298 + PGA1_c04080 0.73 +1.5
393,306 - PGA1_c04080 0.74 +1.1
393,306 - PGA1_c04080 0.74 +0.2
393,366 + PGA1_c04080 0.80 +0.8
393,375 - PGA1_c04080 0.81 +0.4
393,420 + PGA1_c04080 0.86 +0.5
393,420 + PGA1_c04080 0.86 +1.4
393,468 + +1.4
393,476 - +1.3
393,509 + +0.3
393,519 + +0.2
393,527 - +0.8
393,569 + +0.6
393,577 - -0.0
393,588 + +1.5
393,596 + +1.2
393,719 + PGA1_c04090 0.11 -0.6
393,724 + PGA1_c04090 0.12 +1.2
393,759 - PGA1_c04090 0.15 +0.7
393,856 - PGA1_c04090 0.23 +0.0
393,863 + PGA1_c04090 0.23 +0.6
393,863 + PGA1_c04090 0.23 +0.0
393,863 + PGA1_c04090 0.23 +0.9
393,871 - PGA1_c04090 0.24 +1.4
393,871 - PGA1_c04090 0.24 -1.3
393,913 + PGA1_c04090 0.28 +0.8
393,921 - PGA1_c04090 0.28 -1.0
393,956 + PGA1_c04090 0.31 -0.0
394,011 - PGA1_c04090 0.36 +1.8
394,076 - PGA1_c04090 0.41 +0.4
394,133 - PGA1_c04090 0.46 +0.3
394,143 + PGA1_c04090 0.47 +0.4
394,143 + PGA1_c04090 0.47 +1.4
394,151 - PGA1_c04090 0.47 +1.0
394,153 + PGA1_c04090 0.48 +1.0
394,193 + PGA1_c04090 0.51 +1.1
394,230 - PGA1_c04090 0.54 +0.2
394,262 + PGA1_c04090 0.57 +1.0
394,280 + PGA1_c04090 0.58 +1.4
394,280 + PGA1_c04090 0.58 +0.5
394,361 + PGA1_c04090 0.65 -2.1
394,361 + PGA1_c04090 0.65 +0.3
394,361 + PGA1_c04090 0.65 -2.4
394,369 - PGA1_c04090 0.66 +0.9
394,382 + PGA1_c04090 0.67 +2.0
394,396 - PGA1_c04090 0.68 +0.7
394,417 - PGA1_c04090 0.69 -0.8
394,424 + PGA1_c04090 0.70 +0.0
394,465 + PGA1_c04090 0.73 +0.1
394,548 + PGA1_c04090 0.80 +0.6

Or see this region's nucleotide sequence