Experiment: m.b. Paraquat dichloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00230 and PGA1_78p00240 are separated by 18 nucleotides PGA1_78p00240 and PGA1_78p00250 are separated by 92 nucleotides PGA1_78p00250 and PGA1_78p00260 are separated by 165 nucleotides
PGA1_78p00230: PGA1_78p00230 - putative NADH-ubiquinone oxidoreductase, at 26,250 to 27,800
_78p00230
PGA1_78p00240: PGA1_78p00240 - Uncharacterized protein conserved in bacteria, at 27,819 to 30,284
_78p00240
PGA1_78p00250: PGA1_78p00250 - putative HTH-type transcriptional regulator, at 30,377 to 30,988
_78p00250
PGA1_78p00260: PGA1_78p00260 - dihydrolipoyl dehydrogenase LpdA, at 31,154 to 32,536
_78p00260
Position (kb) 27
28
29
30
31 Strain fitness (log2 ratio) -1
0
1
2 at 27.374 kb on + strand, within PGA1_78p00230 at 27.384 kb on + strand, within PGA1_78p00230 at 27.718 kb on + strand at 27.815 kb on + strand at 27.880 kb on - strand at 28.316 kb on + strand, within PGA1_78p00240 at 28.512 kb on + strand, within PGA1_78p00240 at 28.520 kb on - strand, within PGA1_78p00240 at 28.758 kb on - strand, within PGA1_78p00240 at 28.877 kb on + strand, within PGA1_78p00240 at 29.535 kb on - strand, within PGA1_78p00240 at 29.614 kb on - strand, within PGA1_78p00240 at 29.826 kb on + strand, within PGA1_78p00240 at 30.437 kb on + strand at 30.644 kb on - strand, within PGA1_78p00250 at 30.644 kb on - strand, within PGA1_78p00250 at 30.689 kb on - strand, within PGA1_78p00250 at 30.919 kb on + strand, within PGA1_78p00250 at 31.115 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml remove 27,374 + PGA1_78p00230 0.72 -0.4 27,384 + PGA1_78p00230 0.73 -1.0 27,718 + -1.0 27,815 + +2.6 27,880 - +1.0 28,316 + PGA1_78p00240 0.20 +1.0 28,512 + PGA1_78p00240 0.28 -0.2 28,520 - PGA1_78p00240 0.28 +1.0 28,758 - PGA1_78p00240 0.38 +2.0 28,877 + PGA1_78p00240 0.43 +1.7 29,535 - PGA1_78p00240 0.70 +0.4 29,614 - PGA1_78p00240 0.73 -1.6 29,826 + PGA1_78p00240 0.81 +0.6 30,437 + +1.0 30,644 - PGA1_78p00250 0.44 +0.7 30,644 - PGA1_78p00250 0.44 -1.3 30,689 - PGA1_78p00250 0.51 +0.3 30,919 + PGA1_78p00250 0.89 -0.0 31,115 + -1.0
Or see this region's nucleotide sequence