Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_262p01730

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_262p01710 and PGA1_262p01720 are separated by 12 nucleotidesPGA1_262p01720 and PGA1_262p01730 overlap by 4 nucleotidesPGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotidesPGA1_262p01740 and PGA1_262p01750 are separated by 11 nucleotides PGA1_262p01710: PGA1_262p01710 - putative glutathione transport system permease protein, at 188,005 to 188,943 _262p01710 PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834 _262p01720 PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808 _262p01730 PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734 _262p01740 PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389 _262p01750 Position (kb) 189 190 191Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 188.980 kb on + strandat 188.988 kb on - strandat 189.046 kb on + strand, within PGA1_262p01720at 189.046 kb on + strand, within PGA1_262p01720at 189.095 kb on + strand, within PGA1_262p01720at 189.173 kb on - strand, within PGA1_262p01720at 189.361 kb on + strand, within PGA1_262p01720at 189.393 kb on + strand, within PGA1_262p01720at 189.474 kb on + strand, within PGA1_262p01720at 189.474 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.476 kb on + strand, within PGA1_262p01720at 189.482 kb on - strand, within PGA1_262p01720at 189.482 kb on - strand, within PGA1_262p01720at 189.494 kb on - strand, within PGA1_262p01720at 189.540 kb on + strand, within PGA1_262p01720at 189.540 kb on + strand, within PGA1_262p01720at 189.586 kb on + strand, within PGA1_262p01720at 189.647 kb on + strand, within PGA1_262p01720at 189.685 kb on - strand, within PGA1_262p01720at 189.695 kb on - strand, within PGA1_262p01720at 189.698 kb on + strand, within PGA1_262p01720at 189.825 kb on + strandat 189.835 kb on + strandat 189.893 kb on + strandat 189.899 kb on - strandat 189.899 kb on - strandat 189.940 kb on - strand, within PGA1_262p01730at 189.976 kb on - strand, within PGA1_262p01730at 189.981 kb on - strand, within PGA1_262p01730at 190.051 kb on - strand, within PGA1_262p01730at 190.107 kb on - strand, within PGA1_262p01730at 190.243 kb on - strand, within PGA1_262p01730at 190.311 kb on - strand, within PGA1_262p01730at 190.340 kb on - strand, within PGA1_262p01730at 190.389 kb on - strand, within PGA1_262p01730at 190.471 kb on + strand, within PGA1_262p01730at 190.471 kb on + strand, within PGA1_262p01730at 190.506 kb on + strand, within PGA1_262p01730at 190.574 kb on + strand, within PGA1_262p01730at 190.611 kb on - strand, within PGA1_262p01730at 190.613 kb on + strand, within PGA1_262p01730at 190.620 kb on - strand, within PGA1_262p01730at 190.729 kb on + strandat 190.737 kb on - strandat 190.781 kb on + strandat 190.809 kb on + strandat 190.849 kb on - strandat 190.900 kb on - strand, within PGA1_262p01740at 190.900 kb on - strand, within PGA1_262p01740at 190.900 kb on - strand, within PGA1_262p01740at 190.912 kb on - strand, within PGA1_262p01740at 190.968 kb on - strand, within PGA1_262p01740at 191.139 kb on + strand, within PGA1_262p01740at 191.231 kb on - strand, within PGA1_262p01740at 191.261 kb on - strand, within PGA1_262p01740at 191.266 kb on - strand, within PGA1_262p01740at 191.323 kb on + strand, within PGA1_262p01740at 191.323 kb on + strand, within PGA1_262p01740at 191.327 kb on - strand, within PGA1_262p01740at 191.375 kb on + strand, within PGA1_262p01740at 191.410 kb on + strand, within PGA1_262p01740at 191.418 kb on - strand, within PGA1_262p01740at 191.457 kb on - strand, within PGA1_262p01740at 191.520 kb on + strand, within PGA1_262p01740at 191.601 kb on + strand, within PGA1_262p01740at 191.601 kb on + strand, within PGA1_262p01740at 191.601 kb on + strand, within PGA1_262p01740at 191.609 kb on - strand, within PGA1_262p01740at 191.671 kb on + strandat 191.744 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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188,980 + +0.1
188,988 - -0.7
189,046 + PGA1_262p01720 0.10 +1.1
189,046 + PGA1_262p01720 0.10 +1.4
189,095 + PGA1_262p01720 0.16 -0.8
189,173 - PGA1_262p01720 0.25 +0.4
189,361 + PGA1_262p01720 0.46 -1.4
189,393 + PGA1_262p01720 0.50 -0.2
189,474 + PGA1_262p01720 0.59 +0.2
189,474 + PGA1_262p01720 0.59 +0.1
189,476 + PGA1_262p01720 0.59 +1.5
189,476 + PGA1_262p01720 0.59 -2.2
189,476 + PGA1_262p01720 0.59 -0.5
189,482 - PGA1_262p01720 0.60 +0.1
189,482 - PGA1_262p01720 0.60 +2.0
189,494 - PGA1_262p01720 0.61 -0.6
189,540 + PGA1_262p01720 0.66 -0.6
189,540 + PGA1_262p01720 0.66 -0.6
189,586 + PGA1_262p01720 0.72 -0.6
189,647 + PGA1_262p01720 0.79 +0.5
189,685 - PGA1_262p01720 0.83 -0.5
189,695 - PGA1_262p01720 0.84 -0.8
189,698 + PGA1_262p01720 0.84 -0.0
189,825 + -1.2
189,835 + -0.0
189,893 + +0.4
189,899 - +0.4
189,899 - -0.0
189,940 - PGA1_262p01730 0.11 +0.5
189,976 - PGA1_262p01730 0.15 -1.5
189,981 - PGA1_262p01730 0.15 -1.0
190,051 - PGA1_262p01730 0.22 +1.5
190,107 - PGA1_262p01730 0.28 -1.8
190,243 - PGA1_262p01730 0.42 +1.0
190,311 - PGA1_262p01730 0.49 +0.6
190,340 - PGA1_262p01730 0.52 +0.8
190,389 - PGA1_262p01730 0.57 +0.4
190,471 + PGA1_262p01730 0.65 +1.0
190,471 + PGA1_262p01730 0.65 +1.4
190,506 + PGA1_262p01730 0.69 -1.0
190,574 + PGA1_262p01730 0.76 +0.4
190,611 - PGA1_262p01730 0.80 +3.8
190,613 + PGA1_262p01730 0.80 +1.0
190,620 - PGA1_262p01730 0.81 +1.0
190,729 + -1.0
190,737 - +0.4
190,781 + -1.2
190,809 + -1.4
190,849 - +0.4
190,900 - PGA1_262p01740 0.10 -0.4
190,900 - PGA1_262p01740 0.10 +0.4
190,900 - PGA1_262p01740 0.10 -1.7
190,912 - PGA1_262p01740 0.12 -0.0
190,968 - PGA1_262p01740 0.18 -0.8
191,139 + PGA1_262p01740 0.36 +0.1
191,231 - PGA1_262p01740 0.46 +1.0
191,261 - PGA1_262p01740 0.49 -0.3
191,266 - PGA1_262p01740 0.50 +1.0
191,323 + PGA1_262p01740 0.56 +0.2
191,323 + PGA1_262p01740 0.56 +0.4
191,327 - PGA1_262p01740 0.56 +0.4
191,375 + PGA1_262p01740 0.61 -0.5
191,410 + PGA1_262p01740 0.65 -0.0
191,418 - PGA1_262p01740 0.66 -1.8
191,457 - PGA1_262p01740 0.70 +0.4
191,520 + PGA1_262p01740 0.77 -0.2
191,601 + PGA1_262p01740 0.86 -0.2
191,601 + PGA1_262p01740 0.86 +0.2
191,601 + PGA1_262p01740 0.86 -0.6
191,609 - PGA1_262p01740 0.86 +0.2
191,671 + -0.4
191,744 - +0.4

Or see this region's nucleotide sequence