Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c29900

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c29890 and PGA1_c29900 are separated by 205 nucleotidesPGA1_c29900 and PGA1_c29910 are separated by 29 nucleotides PGA1_c29890: PGA1_c29890 - histidyl-tRNA synthetase HisS, at 3,125,223 to 3,126,710 _c29890 PGA1_c29900: PGA1_c29900 - protein slyX-like protein, at 3,126,916 to 3,127,110 _c29900 PGA1_c29910: PGA1_c29910 - lead, cadmium, zinc and mercury-transporting ATPase, at 3,127,140 to 3,129,320 _c29910 Position (kb) 3126 3127 3128Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3126.791 kb on + strandat 3126.811 kb on - strandat 3126.813 kb on + strandat 3126.821 kb on - strandat 3126.836 kb on + strandat 3126.843 kb on + strandat 3126.851 kb on - strandat 3126.868 kb on - strandat 3126.868 kb on - strandat 3126.889 kb on - strandat 3126.894 kb on + strandat 3126.899 kb on + strandat 3126.899 kb on + strandat 3126.902 kb on - strandat 3126.902 kb on - strandat 3126.907 kb on - strandat 3126.907 kb on - strandat 3126.907 kb on - strandat 3126.938 kb on + strand, within PGA1_c29900at 3126.956 kb on + strand, within PGA1_c29900at 3127.046 kb on - strand, within PGA1_c29900at 3127.046 kb on - strand, within PGA1_c29900at 3127.112 kb on - strandat 3127.263 kb on - strandat 3127.282 kb on + strandat 3127.283 kb on + strandat 3127.355 kb on - strandat 3127.360 kb on - strand, within PGA1_c29910at 3127.435 kb on + strand, within PGA1_c29910at 3127.443 kb on - strand, within PGA1_c29910at 3127.443 kb on - strand, within PGA1_c29910at 3127.469 kb on + strand, within PGA1_c29910at 3127.512 kb on - strand, within PGA1_c29910at 3127.513 kb on + strand, within PGA1_c29910at 3127.531 kb on + strand, within PGA1_c29910at 3127.533 kb on - strand, within PGA1_c29910at 3127.595 kb on - strand, within PGA1_c29910at 3127.682 kb on + strand, within PGA1_c29910at 3127.705 kb on + strand, within PGA1_c29910at 3127.715 kb on + strand, within PGA1_c29910at 3127.715 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.741 kb on + strand, within PGA1_c29910at 3127.761 kb on - strand, within PGA1_c29910at 3127.780 kb on - strand, within PGA1_c29910at 3127.783 kb on - strand, within PGA1_c29910at 3127.783 kb on - strand, within PGA1_c29910at 3127.785 kb on - strand, within PGA1_c29910at 3127.850 kb on - strand, within PGA1_c29910at 3127.851 kb on - strand, within PGA1_c29910at 3127.869 kb on + strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.885 kb on - strand, within PGA1_c29910at 3127.914 kb on + strand, within PGA1_c29910at 3127.947 kb on - strand, within PGA1_c29910at 3127.970 kb on + strand, within PGA1_c29910at 3127.994 kb on + strand, within PGA1_c29910at 3128.000 kb on - strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.056 kb on + strand, within PGA1_c29910at 3128.064 kb on - strand, within PGA1_c29910at 3128.075 kb on - strand, within PGA1_c29910at 3128.086 kb on - strand, within PGA1_c29910at 3128.108 kb on - strand, within PGA1_c29910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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3,126,791 + +1.9
3,126,811 - -0.6
3,126,813 + +0.6
3,126,821 - +0.9
3,126,836 + +1.3
3,126,843 + -0.1
3,126,851 - +0.4
3,126,868 - -0.4
3,126,868 - -0.4
3,126,889 - +0.4
3,126,894 + -0.5
3,126,899 + +0.6
3,126,899 + +0.6
3,126,902 - -0.2
3,126,902 - -0.2
3,126,907 - +0.1
3,126,907 - -1.6
3,126,907 - -0.6
3,126,938 + PGA1_c29900 0.11 -1.0
3,126,956 + PGA1_c29900 0.21 -2.1
3,127,046 - PGA1_c29900 0.67 +1.5
3,127,046 - PGA1_c29900 0.67 +0.7
3,127,112 - -2.9
3,127,263 - -0.1
3,127,282 + -2.3
3,127,283 + -0.8
3,127,355 - +0.1
3,127,360 - PGA1_c29910 0.10 +0.4
3,127,435 + PGA1_c29910 0.14 -1.2
3,127,443 - PGA1_c29910 0.14 +0.6
3,127,443 - PGA1_c29910 0.14 -0.5
3,127,469 + PGA1_c29910 0.15 -0.6
3,127,512 - PGA1_c29910 0.17 -1.0
3,127,513 + PGA1_c29910 0.17 +0.0
3,127,531 + PGA1_c29910 0.18 -0.8
3,127,533 - PGA1_c29910 0.18 +1.0
3,127,595 - PGA1_c29910 0.21 -1.2
3,127,682 + PGA1_c29910 0.25 -0.3
3,127,705 + PGA1_c29910 0.26 +2.3
3,127,715 + PGA1_c29910 0.26 -0.4
3,127,715 + PGA1_c29910 0.26 +0.8
3,127,741 + PGA1_c29910 0.28 +0.8
3,127,741 + PGA1_c29910 0.28 +1.3
3,127,741 + PGA1_c29910 0.28 +0.0
3,127,761 - PGA1_c29910 0.28 +2.0
3,127,780 - PGA1_c29910 0.29 -1.1
3,127,783 - PGA1_c29910 0.29 +0.3
3,127,783 - PGA1_c29910 0.29 -0.4
3,127,785 - PGA1_c29910 0.30 -1.7
3,127,850 - PGA1_c29910 0.33 +0.8
3,127,851 - PGA1_c29910 0.33 -3.0
3,127,869 + PGA1_c29910 0.33 +0.3
3,127,885 - PGA1_c29910 0.34 +0.0
3,127,885 - PGA1_c29910 0.34 +0.2
3,127,885 - PGA1_c29910 0.34 +0.2
3,127,914 + PGA1_c29910 0.35 +0.4
3,127,947 - PGA1_c29910 0.37 -1.0
3,127,970 + PGA1_c29910 0.38 +0.8
3,127,994 + PGA1_c29910 0.39 +0.5
3,128,000 - PGA1_c29910 0.39 -2.1
3,128,056 + PGA1_c29910 0.42 -0.6
3,128,056 + PGA1_c29910 0.42 -0.4
3,128,056 + PGA1_c29910 0.42 +0.0
3,128,064 - PGA1_c29910 0.42 -0.0
3,128,075 - PGA1_c29910 0.43 -0.2
3,128,086 - PGA1_c29910 0.43 -0.9
3,128,108 - PGA1_c29910 0.44 +0.0

Or see this region's nucleotide sequence