Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c02890

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c02880 and PGA1_c02890 are separated by 196 nucleotidesPGA1_c02890 and PGA1_c02900 overlap by 1 nucleotidesPGA1_c02900 and PGA1_c02910 are separated by 3 nucleotidesPGA1_c02910 and PGA1_c02920 are separated by 15 nucleotides PGA1_c02880: PGA1_c02880 - uvrABC system protein C, at 277,737 to 279,626 _c02880 PGA1_c02890: PGA1_c02890 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase PgsA, at 279,823 to 280,494 _c02890 PGA1_c02900: PGA1_c02900 - putative molybdopterin-converting factor subunit 1, at 280,494 to 280,739 _c02900 PGA1_c02910: PGA1_c02910 - molybdopterin-converting factor subunit 2, at 280,743 to 281,204 _c02910 PGA1_c02920: PGA1_c02920 - hypothetical protein, at 281,220 to 281,534 _c02920 Position (kb) 279 280 281Strain fitness (log2 ratio) -2 -1 0 1 2at 278.827 kb on + strand, within PGA1_c02880at 278.925 kb on + strand, within PGA1_c02880at 278.995 kb on + strand, within PGA1_c02880at 278.995 kb on + strand, within PGA1_c02880at 279.008 kb on + strand, within PGA1_c02880at 279.091 kb on - strand, within PGA1_c02880at 279.107 kb on + strand, within PGA1_c02880at 279.115 kb on - strand, within PGA1_c02880at 279.115 kb on - strand, within PGA1_c02880at 279.117 kb on + strand, within PGA1_c02880at 279.218 kb on - strand, within PGA1_c02880at 279.241 kb on - strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.252 kb on + strand, within PGA1_c02880at 279.260 kb on - strand, within PGA1_c02880at 279.322 kb on + strand, within PGA1_c02880at 279.345 kb on + strand, within PGA1_c02880at 279.410 kb on + strand, within PGA1_c02880at 279.449 kb on - strandat 279.464 kb on - strandat 279.539 kb on + strandat 279.620 kb on + strandat 279.622 kb on + strandat 279.665 kb on + strandat 279.691 kb on - strandat 279.693 kb on + strandat 279.725 kb on - strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.750 kb on + strandat 279.758 kb on - strandat 279.758 kb on - strandat 279.758 kb on - strandat 279.758 kb on - strandat 280.610 kb on + strand, within PGA1_c02900at 280.618 kb on - strand, within PGA1_c02900at 280.776 kb on - strandat 280.776 kb on - strandat 280.839 kb on + strand, within PGA1_c02910at 280.847 kb on - strand, within PGA1_c02910at 280.847 kb on - strand, within PGA1_c02910at 280.913 kb on + strand, within PGA1_c02910at 281.024 kb on + strand, within PGA1_c02910at 281.056 kb on + strand, within PGA1_c02910at 281.056 kb on + strand, within PGA1_c02910at 281.251 kb on - strandat 281.251 kb on - strandat 281.299 kb on + strand, within PGA1_c02920at 281.322 kb on + strand, within PGA1_c02920at 281.340 kb on - strand, within PGA1_c02920at 281.385 kb on + strand, within PGA1_c02920at 281.390 kb on + strand, within PGA1_c02920at 281.411 kb on + strand, within PGA1_c02920

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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278,827 + PGA1_c02880 0.58 -1.3
278,925 + PGA1_c02880 0.63 +0.4
278,995 + PGA1_c02880 0.67 -0.6
278,995 + PGA1_c02880 0.67 -1.8
279,008 + PGA1_c02880 0.67 +0.0
279,091 - PGA1_c02880 0.72 -0.6
279,107 + PGA1_c02880 0.72 -0.4
279,115 - PGA1_c02880 0.73 -0.6
279,115 - PGA1_c02880 0.73 -2.0
279,117 + PGA1_c02880 0.73 -1.1
279,218 - PGA1_c02880 0.78 -1.9
279,241 - PGA1_c02880 0.80 -0.4
279,252 + PGA1_c02880 0.80 +0.0
279,252 + PGA1_c02880 0.80 +0.3
279,252 + PGA1_c02880 0.80 -1.0
279,260 - PGA1_c02880 0.81 -0.6
279,322 + PGA1_c02880 0.84 +0.0
279,345 + PGA1_c02880 0.85 +0.7
279,410 + PGA1_c02880 0.89 -1.5
279,449 - -0.6
279,464 - -0.6
279,539 + +0.6
279,620 + -1.1
279,622 + +0.7
279,665 + +0.0
279,691 - +0.3
279,693 + -0.7
279,725 - +1.0
279,750 + +0.5
279,750 + -1.3
279,750 + -0.1
279,750 + +0.3
279,750 + -0.2
279,758 - +0.9
279,758 - -0.4
279,758 - -1.7
279,758 - +0.6
280,610 + PGA1_c02900 0.47 -1.3
280,618 - PGA1_c02900 0.50 -1.1
280,776 - +0.0
280,776 - -1.5
280,839 + PGA1_c02910 0.21 -0.3
280,847 - PGA1_c02910 0.23 +0.7
280,847 - PGA1_c02910 0.23 -1.7
280,913 + PGA1_c02910 0.37 +0.7
281,024 + PGA1_c02910 0.61 +0.3
281,056 + PGA1_c02910 0.68 +1.0
281,056 + PGA1_c02910 0.68 -0.6
281,251 - -0.5
281,251 - +0.0
281,299 + PGA1_c02920 0.25 -1.3
281,322 + PGA1_c02920 0.32 +0.1
281,340 - PGA1_c02920 0.38 -0.3
281,385 + PGA1_c02920 0.52 +1.9
281,390 + PGA1_c02920 0.54 -1.6
281,411 + PGA1_c02920 0.61 -1.3

Or see this region's nucleotide sequence