Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c24540

Experiment: m.b. Paraquat dichloride 0.016 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c24530 and PGA1_c24540 are separated by 167 nucleotidesPGA1_c24540 and PGA1_c24550 overlap by 58 nucleotides PGA1_c24530: PGA1_c24530 - aspartyl-tRNA(Asp/Asn) synthetase (EC 6.1.1.23) (from data), at 2,555,768 to 2,557,546 _c24530 PGA1_c24540: PGA1_c24540 - putative aminotransferase, class IV, at 2,557,714 to 2,558,367 _c24540 PGA1_c24550: PGA1_c24550 - putative para-aminobenzoate synthase component 1, at 2,558,310 to 2,559,461 _c24550 Position (kb) 2557 2558 2559Strain fitness (log2 ratio) -1 0 1 2at 2557.774 kb on - strandat 2557.867 kb on - strand, within PGA1_c24540at 2557.898 kb on - strand, within PGA1_c24540at 2557.935 kb on - strand, within PGA1_c24540at 2557.973 kb on - strand, within PGA1_c24540at 2557.981 kb on - strand, within PGA1_c24540at 2558.005 kb on - strand, within PGA1_c24540at 2558.021 kb on + strand, within PGA1_c24540at 2558.033 kb on + strand, within PGA1_c24540at 2558.108 kb on + strand, within PGA1_c24540at 2558.251 kb on + strand, within PGA1_c24540at 2558.395 kb on - strandat 2558.400 kb on + strandat 2558.408 kb on - strandat 2558.408 kb on - strandat 2558.408 kb on - strandat 2558.408 kb on - strandat 2558.423 kb on + strandat 2558.450 kb on + strand, within PGA1_c24550at 2558.467 kb on + strand, within PGA1_c24550at 2558.490 kb on + strand, within PGA1_c24550at 2558.538 kb on + strand, within PGA1_c24550at 2558.681 kb on + strand, within PGA1_c24550at 2558.691 kb on + strand, within PGA1_c24550at 2558.691 kb on + strand, within PGA1_c24550at 2558.691 kb on + strand, within PGA1_c24550at 2558.691 kb on + strand, within PGA1_c24550at 2558.699 kb on - strand, within PGA1_c24550at 2558.699 kb on - strand, within PGA1_c24550at 2558.730 kb on + strand, within PGA1_c24550at 2558.730 kb on + strand, within PGA1_c24550at 2558.753 kb on - strand, within PGA1_c24550at 2558.851 kb on - strand, within PGA1_c24550at 2558.866 kb on - strand, within PGA1_c24550at 2558.918 kb on + strand, within PGA1_c24550at 2558.926 kb on - strand, within PGA1_c24550at 2558.956 kb on + strand, within PGA1_c24550at 2559.122 kb on + strand, within PGA1_c24550at 2559.123 kb on - strand, within PGA1_c24550at 2559.125 kb on + strand, within PGA1_c24550at 2559.125 kb on + strand, within PGA1_c24550at 2559.199 kb on + strand, within PGA1_c24550at 2559.229 kb on - strand, within PGA1_c24550at 2559.244 kb on + strand, within PGA1_c24550at 2559.292 kb on - strand, within PGA1_c24550at 2559.345 kb on + strand, within PGA1_c24550at 2559.353 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml
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2,557,774 - +1.2
2,557,867 - PGA1_c24540 0.23 -0.9
2,557,898 - PGA1_c24540 0.28 +0.7
2,557,935 - PGA1_c24540 0.34 -1.4
2,557,973 - PGA1_c24540 0.40 +2.2
2,557,981 - PGA1_c24540 0.41 +0.1
2,558,005 - PGA1_c24540 0.44 +0.3
2,558,021 + PGA1_c24540 0.47 +0.2
2,558,033 + PGA1_c24540 0.49 +1.1
2,558,108 + PGA1_c24540 0.60 +1.3
2,558,251 + PGA1_c24540 0.82 -0.4
2,558,395 - -1.2
2,558,400 + -0.6
2,558,408 - +0.6
2,558,408 - -0.2
2,558,408 - -0.2
2,558,408 - +0.1
2,558,423 + -0.9
2,558,450 + PGA1_c24550 0.12 +0.7
2,558,467 + PGA1_c24550 0.14 -0.3
2,558,490 + PGA1_c24550 0.16 -1.0
2,558,538 + PGA1_c24550 0.20 +0.2
2,558,681 + PGA1_c24550 0.32 -1.4
2,558,691 + PGA1_c24550 0.33 +0.3
2,558,691 + PGA1_c24550 0.33 -1.0
2,558,691 + PGA1_c24550 0.33 -1.0
2,558,691 + PGA1_c24550 0.33 -0.1
2,558,699 - PGA1_c24550 0.34 +0.4
2,558,699 - PGA1_c24550 0.34 +0.5
2,558,730 + PGA1_c24550 0.36 +0.4
2,558,730 + PGA1_c24550 0.36 -0.3
2,558,753 - PGA1_c24550 0.38 +0.6
2,558,851 - PGA1_c24550 0.47 -0.2
2,558,866 - PGA1_c24550 0.48 -0.8
2,558,918 + PGA1_c24550 0.53 +1.2
2,558,926 - PGA1_c24550 0.53 +0.0
2,558,956 + PGA1_c24550 0.56 +0.3
2,559,122 + PGA1_c24550 0.70 -0.6
2,559,123 - PGA1_c24550 0.71 +0.5
2,559,125 + PGA1_c24550 0.71 -0.4
2,559,125 + PGA1_c24550 0.71 +0.7
2,559,199 + PGA1_c24550 0.77 +0.6
2,559,229 - PGA1_c24550 0.80 +0.1
2,559,244 + PGA1_c24550 0.81 +1.6
2,559,292 - PGA1_c24550 0.85 -0.6
2,559,345 + PGA1_c24550 0.90 +0.0
2,559,353 - -0.5

Or see this region's nucleotide sequence