Experiment: m.b. Paraquat dichloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c14830 and PGA1_c14840 are separated by 1 nucleotides PGA1_c14840 and PGA1_c14850 are separated by 128 nucleotides PGA1_c14850 and PGA1_c14860 overlap by 1 nucleotides
PGA1_c14830: PGA1_c14830 - trk system potassium uptake protein TrkA, at 1,537,897 to 1,539,273
_c14830
PGA1_c14840: PGA1_c14840 - putative trk system potassium uptake protein TrkH, at 1,539,275 to 1,540,822
_c14840
PGA1_c14850: PGA1_c14850 - protein hfq (RNA chaperone hfq), at 1,540,951 to 1,541,190
_c14850
PGA1_c14860: PGA1_c14860 - GTP-binding protein HflX, at 1,541,190 to 1,542,461
_c14860
Position (kb) 1539
1540
1541 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 1540.795 kb on + strand at 1540.800 kb on + strand at 1541.166 kb on + strand, within PGA1_c14850 at 1541.193 kb on + strand at 1541.224 kb on - strand at 1541.364 kb on + strand, within PGA1_c14860 at 1541.372 kb on + strand, within PGA1_c14860 at 1541.372 kb on - strand, within PGA1_c14860 at 1541.423 kb on + strand, within PGA1_c14860 at 1541.431 kb on - strand, within PGA1_c14860 at 1541.440 kb on - strand, within PGA1_c14860 at 1541.514 kb on + strand, within PGA1_c14860 at 1541.551 kb on + strand, within PGA1_c14860 at 1541.559 kb on + strand, within PGA1_c14860 at 1541.615 kb on + strand, within PGA1_c14860 at 1541.618 kb on - strand, within PGA1_c14860 at 1541.623 kb on - strand, within PGA1_c14860 at 1541.679 kb on - strand, within PGA1_c14860 at 1541.738 kb on + strand, within PGA1_c14860
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml remove 1,540,795 + +0.1 1,540,800 + -1.0 1,541,166 + PGA1_c14850 0.90 -2.9 1,541,193 + +2.5 1,541,224 - +0.3 1,541,364 + PGA1_c14860 0.14 -0.6 1,541,372 + PGA1_c14860 0.14 -0.6 1,541,372 - PGA1_c14860 0.14 +0.4 1,541,423 + PGA1_c14860 0.18 +0.0 1,541,431 - PGA1_c14860 0.19 -0.1 1,541,440 - PGA1_c14860 0.20 -1.0 1,541,514 + PGA1_c14860 0.25 +0.2 1,541,551 + PGA1_c14860 0.28 -1.7 1,541,559 + PGA1_c14860 0.29 -1.0 1,541,615 + PGA1_c14860 0.33 +1.0 1,541,618 - PGA1_c14860 0.34 -0.6 1,541,623 - PGA1_c14860 0.34 +0.4 1,541,679 - PGA1_c14860 0.38 -1.3 1,541,738 + PGA1_c14860 0.43 -0.6
Or see this region's nucleotide sequence