Experiment: m.b. Paraquat dichloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c12760 and PGA1_c12770 are separated by 346 nucleotides PGA1_c12770 and PGA1_c12780 are separated by 115 nucleotides PGA1_c12780 and PGA1_c12790 are separated by 233 nucleotides PGA1_c12790 and PGA1_c12800 are separated by 171 nucleotides
PGA1_c12760: PGA1_c12760 - beta-lactamase hydrolase-like protein Blh, at 1,321,695 to 1,322,558
_c12760
PGA1_c12770: PGA1_c12770 - hypothetical protein, at 1,322,905 to 1,323,135
_c12770
PGA1_c12780: PGA1_c12780 - hypothetical protein, at 1,323,251 to 1,323,472
_c12780
PGA1_c12790: PGA1_c12790 - Uncharacterized protein conserved in bacteria, at 1,323,706 to 1,323,969
_c12790
PGA1_c12800: PGA1_c12800 - endoribonuclease-like protein, at 1,324,141 to 1,324,536
_c12800
Position (kb)
1323
1324 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1322.269 kb on - strand, within PGA1_c12760 at 1322.269 kb on - strand, within PGA1_c12760 at 1322.309 kb on + strand, within PGA1_c12760 at 1322.309 kb on + strand, within PGA1_c12760 at 1322.316 kb on + strand, within PGA1_c12760 at 1322.317 kb on - strand, within PGA1_c12760 at 1322.317 kb on - strand, within PGA1_c12760 at 1322.317 kb on - strand, within PGA1_c12760 at 1322.326 kb on + strand, within PGA1_c12760 at 1322.329 kb on - strand, within PGA1_c12760 at 1322.334 kb on - strand, within PGA1_c12760 at 1322.334 kb on - strand, within PGA1_c12760 at 1322.334 kb on - strand, within PGA1_c12760 at 1322.382 kb on - strand, within PGA1_c12760 at 1322.386 kb on + strand, within PGA1_c12760 at 1322.472 kb on + strand at 1322.480 kb on - strand at 1322.513 kb on + strand at 1322.517 kb on + strand at 1322.679 kb on + strand at 1322.687 kb on - strand at 1322.724 kb on - strand at 1322.796 kb on - strand at 1322.817 kb on + strand at 1322.825 kb on - strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1322.884 kb on + strand at 1323.000 kb on + strand, within PGA1_c12770 at 1323.000 kb on + strand, within PGA1_c12770 at 1323.041 kb on - strand, within PGA1_c12770 at 1323.140 kb on + strand at 1323.155 kb on + strand at 1323.155 kb on + strand at 1323.180 kb on + strand at 1323.187 kb on + strand at 1323.243 kb on - strand at 1323.270 kb on - strand at 1323.281 kb on - strand, within PGA1_c12780 at 1323.355 kb on + strand, within PGA1_c12780 at 1323.355 kb on + strand, within PGA1_c12780 at 1323.413 kb on - strand, within PGA1_c12780 at 1323.487 kb on - strand at 1323.518 kb on - strand at 1323.539 kb on + strand at 1323.552 kb on - strand at 1323.552 kb on - strand at 1323.552 kb on - strand at 1323.554 kb on + strand at 1323.613 kb on - strand at 1323.622 kb on + strand at 1323.622 kb on + strand at 1323.622 kb on + strand at 1323.630 kb on - strand at 1323.708 kb on + strand at 1324.000 kb on - strand at 1324.002 kb on + strand at 1324.002 kb on + strand at 1324.105 kb on - strand at 1324.110 kb on - strand at 1324.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml remove 1,322,269 - PGA1_c12760 0.66 +0.5 1,322,269 - PGA1_c12760 0.66 +0.2 1,322,309 + PGA1_c12760 0.71 +0.9 1,322,309 + PGA1_c12760 0.71 -2.8 1,322,316 + PGA1_c12760 0.72 -0.9 1,322,317 - PGA1_c12760 0.72 +0.1 1,322,317 - PGA1_c12760 0.72 +0.7 1,322,317 - PGA1_c12760 0.72 +0.6 1,322,326 + PGA1_c12760 0.73 -1.2 1,322,329 - PGA1_c12760 0.73 +1.1 1,322,334 - PGA1_c12760 0.74 -0.4 1,322,334 - PGA1_c12760 0.74 +0.9 1,322,334 - PGA1_c12760 0.74 +0.4 1,322,382 - PGA1_c12760 0.80 -0.5 1,322,386 + PGA1_c12760 0.80 +0.9 1,322,472 + +0.6 1,322,480 - -0.4 1,322,513 + -0.7 1,322,517 + +0.7 1,322,679 + +0.2 1,322,687 - -1.5 1,322,724 - -1.4 1,322,796 - +0.7 1,322,817 + +1.2 1,322,825 - +0.9 1,322,884 + +0.9 1,322,884 + -1.9 1,322,884 + +0.6 1,322,884 + +1.9 1,322,884 + +0.2 1,322,884 + -0.1 1,322,884 + +0.9 1,323,000 + PGA1_c12770 0.41 +0.1 1,323,000 + PGA1_c12770 0.41 +0.9 1,323,041 - PGA1_c12770 0.59 -0.3 1,323,140 + -0.1 1,323,155 + +0.2 1,323,155 + -2.4 1,323,180 + +1.7 1,323,187 + -0.6 1,323,243 - -0.3 1,323,270 - +0.3 1,323,281 - PGA1_c12780 0.14 +0.7 1,323,355 + PGA1_c12780 0.47 +0.1 1,323,355 + PGA1_c12780 0.47 +0.9 1,323,413 - PGA1_c12780 0.73 -0.1 1,323,487 - +0.4 1,323,518 - -1.0 1,323,539 + -1.0 1,323,552 - -2.1 1,323,552 - +0.2 1,323,552 - +1.3 1,323,554 + +0.1 1,323,613 - +1.3 1,323,622 + +0.2 1,323,622 + +0.4 1,323,622 + +0.2 1,323,630 - +0.2 1,323,708 + -1.6 1,324,000 - -1.4 1,324,002 + +2.1 1,324,002 + +0.9 1,324,105 - +0.8 1,324,110 - -0.1 1,324,121 + -0.1
Or see this region's nucleotide sequence