Experiment: m.b. Paraquat dichloride 0.016 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c11570 and PGA1_c11580 are separated by 38 nucleotides PGA1_c11580 and PGA1_c11590 are separated by 263 nucleotides
PGA1_c11570: PGA1_c11570 - putative nopaline-binding periplasmic protein, at 1,196,676 to 1,197,386
_c11570
PGA1_c11580: PGA1_c11580 - octopine permease ATP-binding protein P, at 1,197,425 to 1,198,204
_c11580
PGA1_c11590: PGA1_c11590 - hypothetical protein, at 1,198,468 to 1,199,253
_c11590
Position (kb)
1197
1198
1199 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1196.459 kb on + strand at 1196.502 kb on + strand at 1196.525 kb on + strand at 1196.526 kb on + strand at 1196.596 kb on - strand at 1196.596 kb on - strand at 1196.597 kb on - strand at 1196.614 kb on - strand at 1196.616 kb on + strand at 1196.616 kb on + strand at 1196.624 kb on - strand at 1196.632 kb on + strand at 1196.679 kb on + strand at 1196.682 kb on - strand at 1196.682 kb on - strand at 1196.682 kb on - strand at 1196.934 kb on - strand, within PGA1_c11570 at 1196.992 kb on + strand, within PGA1_c11570 at 1197.050 kb on + strand, within PGA1_c11570 at 1197.072 kb on + strand, within PGA1_c11570 at 1197.080 kb on - strand, within PGA1_c11570 at 1197.161 kb on + strand, within PGA1_c11570 at 1197.161 kb on + strand, within PGA1_c11570 at 1197.161 kb on + strand, within PGA1_c11570 at 1197.161 kb on + strand, within PGA1_c11570 at 1197.187 kb on + strand, within PGA1_c11570 at 1197.212 kb on - strand, within PGA1_c11570 at 1197.282 kb on + strand, within PGA1_c11570 at 1197.290 kb on - strand, within PGA1_c11570 at 1197.300 kb on - strand, within PGA1_c11570 at 1197.322 kb on + strand at 1197.356 kb on + strand at 1197.356 kb on + strand at 1197.366 kb on + strand at 1197.397 kb on - strand at 1197.503 kb on + strand, within PGA1_c11580 at 1197.503 kb on + strand, within PGA1_c11580 at 1197.548 kb on + strand, within PGA1_c11580 at 1197.738 kb on + strand, within PGA1_c11580 at 1197.741 kb on + strand, within PGA1_c11580 at 1197.741 kb on + strand, within PGA1_c11580 at 1197.748 kb on + strand, within PGA1_c11580 at 1197.749 kb on - strand, within PGA1_c11580 at 1197.751 kb on + strand, within PGA1_c11580 at 1197.820 kb on - strand, within PGA1_c11580 at 1197.912 kb on + strand, within PGA1_c11580 at 1198.060 kb on + strand, within PGA1_c11580 at 1198.060 kb on - strand, within PGA1_c11580 at 1198.149 kb on - strand at 1198.149 kb on - strand at 1198.166 kb on - strand at 1198.194 kb on + strand at 1198.199 kb on + strand at 1198.277 kb on - strand at 1198.285 kb on - strand at 1198.340 kb on + strand at 1198.348 kb on - strand at 1198.348 kb on - strand at 1198.348 kb on - strand at 1198.365 kb on - strand at 1198.365 kb on - strand at 1198.369 kb on + strand at 1198.395 kb on + strand at 1198.417 kb on + strand at 1198.465 kb on + strand at 1198.506 kb on + strand at 1198.514 kb on - strand at 1198.565 kb on + strand, within PGA1_c11590 at 1198.588 kb on - strand, within PGA1_c11590 at 1198.588 kb on - strand, within PGA1_c11590 at 1198.652 kb on - strand, within PGA1_c11590 at 1198.700 kb on + strand, within PGA1_c11590 at 1198.723 kb on + strand, within PGA1_c11590 at 1198.757 kb on + strand, within PGA1_c11590 at 1198.758 kb on + strand, within PGA1_c11590 at 1198.766 kb on - strand, within PGA1_c11590 at 1198.877 kb on - strand, within PGA1_c11590 at 1198.981 kb on + strand, within PGA1_c11590 at 1199.024 kb on + strand, within PGA1_c11590 at 1199.033 kb on + strand, within PGA1_c11590 at 1199.046 kb on - strand, within PGA1_c11590 at 1199.060 kb on + strand, within PGA1_c11590 at 1199.068 kb on - strand, within PGA1_c11590 at 1199.070 kb on + strand, within PGA1_c11590 at 1199.070 kb on + strand, within PGA1_c11590 at 1199.077 kb on + strand, within PGA1_c11590 at 1199.080 kb on - strand, within PGA1_c11590 at 1199.112 kb on - strand, within PGA1_c11590 at 1199.194 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Paraquat dichloride 0.016 mg/ml remove 1,196,459 + +0.0 1,196,502 + -0.1 1,196,525 + -1.5 1,196,526 + -2.0 1,196,596 - -0.4 1,196,596 - +1.1 1,196,597 - -2.4 1,196,614 - -1.3 1,196,616 + +0.2 1,196,616 + +0.1 1,196,624 - -1.5 1,196,632 + -1.7 1,196,679 + +1.9 1,196,682 - -3.9 1,196,682 - -1.4 1,196,682 - -2.1 1,196,934 - PGA1_c11570 0.36 -0.9 1,196,992 + PGA1_c11570 0.44 -0.5 1,197,050 + PGA1_c11570 0.53 -1.1 1,197,072 + PGA1_c11570 0.56 -0.7 1,197,080 - PGA1_c11570 0.57 -0.9 1,197,161 + PGA1_c11570 0.68 -0.3 1,197,161 + PGA1_c11570 0.68 -0.2 1,197,161 + PGA1_c11570 0.68 -0.6 1,197,161 + PGA1_c11570 0.68 -0.1 1,197,187 + PGA1_c11570 0.72 -2.1 1,197,212 - PGA1_c11570 0.75 -0.9 1,197,282 + PGA1_c11570 0.85 -0.2 1,197,290 - PGA1_c11570 0.86 +0.8 1,197,300 - PGA1_c11570 0.88 -0.2 1,197,322 + -1.0 1,197,356 + -0.5 1,197,356 + -1.4 1,197,366 + +0.7 1,197,397 - -0.5 1,197,503 + PGA1_c11580 0.10 -0.1 1,197,503 + PGA1_c11580 0.10 -1.6 1,197,548 + PGA1_c11580 0.16 -0.0 1,197,738 + PGA1_c11580 0.40 -1.5 1,197,741 + PGA1_c11580 0.41 +0.5 1,197,741 + PGA1_c11580 0.41 -1.4 1,197,748 + PGA1_c11580 0.41 -0.7 1,197,749 - PGA1_c11580 0.42 -1.1 1,197,751 + PGA1_c11580 0.42 -0.4 1,197,820 - PGA1_c11580 0.51 -1.3 1,197,912 + PGA1_c11580 0.62 -3.3 1,198,060 + PGA1_c11580 0.81 -1.0 1,198,060 - PGA1_c11580 0.81 -0.2 1,198,149 - -1.9 1,198,149 - +0.1 1,198,166 - -1.5 1,198,194 + +0.6 1,198,199 + -0.2 1,198,277 - -0.4 1,198,285 - -0.5 1,198,340 + +1.1 1,198,348 - -1.1 1,198,348 - +0.1 1,198,348 - +0.1 1,198,365 - -0.5 1,198,365 - +0.0 1,198,369 + -0.1 1,198,395 + -0.7 1,198,417 + -0.5 1,198,465 + +0.5 1,198,506 + -0.0 1,198,514 - -0.0 1,198,565 + PGA1_c11590 0.12 +1.9 1,198,588 - PGA1_c11590 0.15 +0.0 1,198,588 - PGA1_c11590 0.15 +0.7 1,198,652 - PGA1_c11590 0.23 -1.4 1,198,700 + PGA1_c11590 0.30 +1.5 1,198,723 + PGA1_c11590 0.32 -2.1 1,198,757 + PGA1_c11590 0.37 -1.4 1,198,758 + PGA1_c11590 0.37 -0.6 1,198,766 - PGA1_c11590 0.38 -2.2 1,198,877 - PGA1_c11590 0.52 +0.4 1,198,981 + PGA1_c11590 0.65 +0.0 1,199,024 + PGA1_c11590 0.71 -0.9 1,199,033 + PGA1_c11590 0.72 -1.1 1,199,046 - PGA1_c11590 0.74 +1.2 1,199,060 + PGA1_c11590 0.75 +0.1 1,199,068 - PGA1_c11590 0.76 +1.2 1,199,070 + PGA1_c11590 0.77 +0.7 1,199,070 + PGA1_c11590 0.77 +0.8 1,199,077 + PGA1_c11590 0.77 -0.5 1,199,080 - PGA1_c11590 0.78 +0.3 1,199,112 - PGA1_c11590 0.82 -0.4 1,199,194 - -1.1
Or see this region's nucleotide sequence