Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS23920

Experiment: L-aspartic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS23915 and BWI76_RS23920 are separated by 377 nucleotidesBWI76_RS23920 and BWI76_RS23925 are separated by 269 nucleotides BWI76_RS23915: BWI76_RS23915 - 5-formyltetrahydrofolate cyclo-ligase, at 4,990,550 to 4,991,146 _RS23915 BWI76_RS23920: BWI76_RS23920 - D-3-phosphoglycerate dehydrogenase, at 4,991,524 to 4,992,756 _RS23920 BWI76_RS23925: BWI76_RS23925 - ribose-5-phosphate isomerase, at 4,993,026 to 4,993,685 _RS23925 Position (kb) 4991 4992 4993Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 4990.770 kb on - strand, within BWI76_RS23915at 4991.082 kb on + strand, within BWI76_RS23915at 4991.197 kb on + strandat 4991.198 kb on + strandat 4991.205 kb on - strandat 4991.354 kb on - strandat 4991.744 kb on + strand, within BWI76_RS23920at 4991.783 kb on + strand, within BWI76_RS23920at 4991.801 kb on - strand, within BWI76_RS23920at 4991.924 kb on - strand, within BWI76_RS23920at 4992.264 kb on - strand, within BWI76_RS23920at 4992.658 kb on + strandat 4992.671 kb on + strandat 4992.746 kb on + strandat 4992.746 kb on + strandat 4992.802 kb on - strandat 4993.048 kb on + strandat 4993.057 kb on + strandat 4993.407 kb on + strand, within BWI76_RS23925at 4993.628 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-aspartic (N)
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4,990,770 - BWI76_RS23915 0.37 -0.1
4,991,082 + BWI76_RS23915 0.89 -1.4
4,991,197 + -0.3
4,991,198 + -0.1
4,991,205 - -0.2
4,991,354 - +0.4
4,991,744 + BWI76_RS23920 0.18 -3.4
4,991,783 + BWI76_RS23920 0.21 -5.6
4,991,801 - BWI76_RS23920 0.22 -4.2
4,991,924 - BWI76_RS23920 0.32 -2.7
4,992,264 - BWI76_RS23920 0.60 -2.8
4,992,658 + -3.3
4,992,671 + -5.1
4,992,746 + -3.7
4,992,746 + -2.5
4,992,802 - -0.5
4,993,048 + -0.4
4,993,057 + -0.6
4,993,407 + BWI76_RS23925 0.58 +2.4
4,993,628 + -2.6

Or see this region's nucleotide sequence